MmuEX6074981 @ mm9
Exon Skipping
Gene
ENSMUSG00000023800 | Tiam2
Description
T cell lymphoma invasion and metastasis 2 [Source:MGI Symbol;Acc:MGI:1344338]
Coordinates
chr17:3438627-3448536:+
Coord C1 exon
chr17:3438627-3438773
Coord A exon
chr17:3439701-3439772
Coord C2 exon
chr17:3448378-3448536
Length
72 bp
Sequences
Splice sites
3' ss Seq
TTCTTCCTCCTCTGTATTAGATG
3' ss Score
7.7
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTGTGTTCCAGAGATGATTCCACTCTCAGGAAAAGAACACTTTCCCTTACCCAGAGAGGAAAAAGCAAGAAAGGCATATTTTCTTCATTGAAAGGTCTGGACACCCTAGCAAGAAAGGGTAGGGAGAAGAGAGCTTCCATAACTCAG
Seq A exon
ATGTTTGATTCTAGCCACAGCCATGGATTTCTTGGAACTCAGCTACCTCAAAAGTCCACTAACTCCAACAAG
Seq C2 exon
GCCCATGACCTGCATCTGTATGGCTCCGCAGTAGACAGCGCGCTGCGAGACAGCATGTGGGAAGTCCAGACTTATGTCCACTTCCAGGATAACGAAGGAGTTACTGTGACCATCAAGCCAGAGCACAGGGTGGAAGATGTTCTGGCTTTGGTGTGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000023800-'11-13,'11-12,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.292 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0219610=RBD=PU(50.9=54.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGGACACCCTAGCAAGA
R:
GCTCTGGCTTGATGGTCACAG
Band lengths:
178-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: