DreEX0008826 @ danRer10
Exon Skipping
Gene
ENSDARG00000098233 | TIAM2 (2 of 2)
Description
T-cell lymphoma invasion and metastasis 2 [Source:HGNC Symbol;Acc:HGNC:11806]
Coordinates
chr20:4577226-4586216:+
Coord C1 exon
chr20:4577226-4577375
Coord A exon
chr20:4581673-4581732
Coord C2 exon
chr20:4586049-4586216
Length
60 bp
Sequences
Splice sites
3' ss Seq
TGTGTTTTTTTGTGATGCAGATA
3' ss Score
9.02
5' ss Seq
GAGGTGATT
5' ss Score
5.41
Exon sequences
Seq C1 exon
ATATGTAACCGTGACGAAGCCACACTGAAGAGACGATCCCGCTCTCATCCTCGAGGTGTGCGGAACAAACGAGGACTGCTCTTTTCTTCTCAGAAGGGATTGGACAGTCTGACCAAACGCAACCGTGAAAAGAGACAGTCCATGTCCCAG
Seq A exon
ATATTTGAAGGATATTCCTCTGGATCGTTTGGTCATCCATCCACGCAAAGCAGCTCGGAG
Seq C2 exon
AGACTGGACATCTTCACCAAACCGCATGCAGCAGCTCCCCCTGATGGTCATCTGTGGGACTGCAGCCTGGAGAGCCTGGTGTTTGTGCTCGCCCCGGACGGTCAGATCATCAGCGTCCCAATCAAACACGACTCTCTGGTGTCCGATGTCCTCACGCTGGCGTGTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000098233_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.436 A=0.320 C2=0.125
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0219610=RBD=PU(54.4=55.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACAGTCTGACCAAACGCAA
R:
CACAAACACCAGGCTCTCCAG
Band lengths:
136-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]