Special

DreEX0079087 @ danRer10

Exon Skipping

Gene
Description
tousled-like kinase 1a [Source:ZFIN;Acc:ZDB-GENE-071008-2]
Coordinates
chr9:3577033-3597950:+
Coord C1 exon
chr9:3577033-3577198
Coord A exon
chr9:3577636-3577778
Coord C2 exon
chr9:3597829-3597950
Length
143 bp
Sequences
Splice sites
3' ss Seq
GTACTTTTGCTCTTTTCCAGCAT
3' ss Score
8.85
5' ss Seq
TGGGTTTGT
5' ss Score
0.77
Exon sequences
Seq C1 exon
GATTGATGTTTTGCTCTGTGGTTCTCTAAAGTGCCTGGATGAGTGCGCAAAGTAGCAGTGGAAGTTTGGAGGGGGCGCCATCTTGGCTCCAGTAGCAGCAGCGGCTCTCGAGCGCGTCCCCGGCGCCGCTTTACACACACCGCGCCGCCCGCACCAGCGAAACAAG
Seq A exon
CATACACGCGTCGTCTTGTGACGTGAAATCACGTTTAAGTTGAAAACTGTCGATTTTGGACGCTGGAGTTGGGGATTTTAGTGAGCAGGAGTGAGACTTGGAGACTGGGTTCATGATGGCAGGGTCGCCGATGGAGCAAATGG
Seq C2 exon
GTGCTATGGAAGAGCTGCACAGTCTGGACCCTCGACGTCAGGAGCTGCTGGAGGCCAGATTTCTGGGCGGGGTCAGCGGAAACACGGTGGGCAGCACTGGCAGCACTAGCGGCGGAACTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042467_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref, Alt. ATG (>10 exons))

No structure available
Features
Disorder rate (Iupred):
  C1=NA A=1.000 C2=1.000
Domain overlap (PFAM):

C1:
NA
A:
NO
C2:
NO


Main Inclusion Isoform:


Main Skipping Isoform:
NA


Other Inclusion Isoforms:


Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
ALTERNATIVE
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATGAGTGCGCAAAGTAGCA
R:
TTTAGTTCCGCCGCTAGTGCT
Band lengths:
252-395
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]