GgaEX1058698 @ galGal4
Exon Skipping
Gene
ENSGALG00000009569 | TLK1
Description
tousled-like kinase 1 [Source:HGNC Symbol;Acc:HGNC:11841]
Coordinates
chr7:17589843-17614595:+
Coord C1 exon
chr7:17589843-17589975
Coord A exon
chr7:17598997-17599063
Coord C2 exon
chr7:17614477-17614595
Length
67 bp
Sequences
Splice sites
3' ss Seq
CCTGTTTTTCTCCCATTCAGTAT
3' ss Score
9.49
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
Exon sequences
Seq C1 exon
NNAAGTAGCAGTGGAAGTTTGGAGGGGCCGCCATCTTGGTCCCGGCTCTCCACGTCCCCACCGAGCCTGCAGGGCTGCTCCGCGGCGGCCTCCCAGCTGCACGGCGCGCCGCCCGGCAAGCCGCCCAAGGAAG
Seq A exon
TATCCTTGCAGCATATAACTTAATTTGGAAATGAAGTACTGGAGCTGTGATGGCAAAACAGTTCCCA
Seq C2 exon
GAGCAATGGATGAACTTCATAGCCTGGACCCAAGAAGACAAGAATTGTTAGAGGCAAGATTCACAGGAGTAGTAAGTGGCAGCACTGGGAGTACTGGAAGTTGCAGCGTTGGAGCTAAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009569_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.462 C2=0.975
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGTGGAAGTTTGGAGGGGC
R:
CTTGTCTTCTTGGGTCCAGGC
Band lengths:
167-234
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]