DreEX0081161 @ danRer10
Exon Skipping
Gene
ENSDARG00000104396 | trim25
Description
tripartite motif containing 25 [Source:ZFIN;Acc:ZDB-GENE-040426-797]
Coordinates
chr6:21921704-21922201:-
Coord C1 exon
chr6:21922033-21922201
Coord A exon
chr6:21921906-21921932
Coord C2 exon
chr6:21921704-21921766
Length
27 bp
Sequences
Splice sites
3' ss Seq
ATGTCCATATGTTTTTACAGAGT
3' ss Score
7.73
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
Exon sequences
Seq C1 exon
GCCTCCATAGATTTGCCCTCAGTGATAAATTTTGAGCCCTATAACCCACGCATGAATTTGGACAGTAAAGAGGTGATCGCTTACCACTCCTCTGCTGTTGCACTTAAAGAGTGGATCACCAAGTTAATGGAACAGTCAACAGAGAACAGAATCTCTGTACTTAAACCAG
Seq A exon
AGTTTGAGAAATCTGTTCTTGGCACAG
Seq C2 exon
GATACCAGTCACCTGGAATTCTTGGTGGGACTCCTGCATTCCTGCCAAATCCAAGAGATATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104396-'6-6,'6-5,7-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.108 A=0.000 C2=0.651
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACTCCTCTGCTGTTGCACTT
R:
GAATGCAGGAGTCCCACCAAG
Band lengths:
126-153
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]