DreINT0167498 @ danRer10
Intron Retention
Gene
ENSDARG00000104396 | trim25
Description
tripartite motif containing 25 [Source:ZFIN;Acc:ZDB-GENE-040426-797]
Coordinates
chr6:21921704-21921932:-
Coord C1 exon
chr6:21921906-21921932
Coord A exon
chr6:21921767-21921905
Coord C2 exon
chr6:21921704-21921766
Length
139 bp
Sequences
Splice sites
5' ss Seq
CAGGTTAGA
5' ss Score
5.94
3' ss Seq
CAGGTCATCTAATCCTCCAGGAT
3' ss Score
6.41
Exon sequences
Seq C1 exon
AGTTTGAGAAATCTGTTCTTGGCACAG
Seq A exon
GTTAGATTGTCTTTTGAACTGAATGGTGTGGAAATCTGGGATATATTATTCATATAAAAACATGATTTAGGAACATTTTATGTTGTCTAATTATACTGTTGAGATAATCCTTAATGAAACAGGTCATCTAATCCTCCAG
Seq C2 exon
GATACCAGTCACCTGGAATTCTTGGTGGGACTCCTGCATTCCTGCCAAATCCAAGAGATATGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104396:ENSDART00000164891:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.651
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]