DreEX0082636 @ danRer10
Exon Skipping
Gene
ENSDARG00000037559 | uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:ZFIN;Acc:ZDB-GENE-040426-2009]
Coordinates
chr23:20734047-20734608:+
Coord C1 exon
chr23:20734047-20734139
Coord A exon
chr23:20734223-20734414
Coord C2 exon
chr23:20734507-20734608
Length
192 bp
Sequences
Splice sites
3' ss Seq
CTTTCTCTTTCATGTTTCAGAGC
3' ss Score
11.39
5' ss Seq
AAGGTAAGC
5' ss Score
10.22
Exon sequences
Seq C1 exon
GACGATGACACAAACTTCCACATGGACTTCATTGTAGCGGCATCTAATCTGAGAGCAGAGAACTATGACATTCCTCCTGCAGACAGACACAAG
Seq A exon
AGCAAACTCATTGCTGGAAAAATCATTCCAGCCATTGCCACAACAACAGCCGCTGTTGTAGGTCTGGTGTGTCTGGAGTTGCTGAAGATCGTTCAGGGGCACAAGAAGCTCGAGTCCTACAAAAATGGCTTCATGAACCTTGCTCTGCCTTTCTTTGCCTTCTCCGAGCCTATAGCTGCCCCCAAGCACAAG
Seq C2 exon
TACTACGAGATTGATTGGACACTTTGGGACCGTTTTGAGGTGAAGGGCATTCAGCCTAATGGAGAGGAAATGACACTCCGGCAGTTCCTGGATTATTTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000037559_MULTIEX1-3/3=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(43.5=100)
A:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(18.2=37.5)
C2:
PF093585=UBA_e1_C=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGATGACACAAACTTCCACATGG
R:
GGAACTGCCGGAGTGTCATTT
Band lengths:
179-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]