RnoEX0095587 @ rn6
Exon Skipping
Gene
ENSRNOG00000019164 | Uba1
Description
ubiquitin-like modifier activating enzyme 1 [Source:RGD Symbol;Acc:1359327]
Coordinates
chrX:1723862-1724734:-
Coord C1 exon
chrX:1724642-1724734
Coord A exon
chrX:1724328-1724519
Coord C2 exon
chrX:1723862-1723963
Length
192 bp
Sequences
Splice sites
3' ss Seq
TTCCTTGGTCTATTTCTCAGAGC
3' ss Score
7.6
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
Exon sequences
Seq C1 exon
GACGATGACAGCAATTTCCACATGGATTTCATTGTGGCTGCATCTAATCTTCGGGCCGAAAACTATGATATTTCCCCTGCAGACCGGCACAAG
Seq A exon
AGCAAGCTGATCGCAGGGAAGATCATCCCAGCTATCGCCACAACCACAGCTGCTGTGGTTGGCCTTGTGTGTCTGGAACTCTACAAGGTAGTTCAGGGGCACCAACAACTTGATTCCTACAAAAATGGTTTCCTGAATTTGGCCCTGCCCTTCTTTGGGTTTTCGGAACCTCTTGCTGCGCCTCGTCACCAG
Seq C2 exon
TACTATAATCAAGAGTGGACATTGTGGGATCGCTTTGAAGTACAAGGGCTACAGCCTAATGGTGAGGAGATGACTCTCAAGCAGTTCCTTGATTACTTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019164-'38-34,'38-32,40-34
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0213416=UBACT=FE(43.5=100)
A:
PF0213416=UBACT=PD(47.8=51.6),PF093585=UBA_e1_C=PU(18.2=37.5)
C2:
PF093585=UBA_e1_C=FE(25.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACGATGACAGCAATTTCCACA
R:
TTAAAGTAATCAAGGAACTGCTTGAG
Band lengths:
194-386
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]