DreEX0082838 @ danRer10
Exon Skipping
Gene
ENSDARG00000100766 | ube2q1
Description
ubiquitin-conjugating enzyme E2Q family member 1 [Source:ZFIN;Acc:ZDB-GENE-050522-329]
Coordinates
chr18:50615358-50680006:-
Coord C1 exon
chr18:50679780-50680006
Coord A exon
chr18:50617261-50617730
Coord C2 exon
chr18:50615358-50615462
Length
470 bp
Sequences
Splice sites
3' ss Seq
TCGTTAACTTCCGGCTACAGCTG
3' ss Score
5.66
5' ss Seq
ACGGTACAC
5' ss Score
5.08
Exon sequences
Seq C1 exon
AACAACGGTCGAAACAAACGACGAAAACCAGCGATATTCCCGTTTCTCTGGCGTTATATAATCTATAGCAAAACCCGCACCAAATATGCGCCTATATGGAGGAATCCAAATTCACTGTAATATTAGCAGCCGTGAAATTCTCAGTGCGAGTGCTCGCGACAGACGATTCATCAGCTGAGGAGAGAAAAGAGATGAACTCTCCTAGAAGAGAAGATTTCCAGAAATAC
Seq A exon
CTGTATCCCTTTTAGCAACCGCAGGCGCGCCTCCATCTTTAAACCCCAGAGAAGCGCTTCCGCTCCGCACCGAACACACAGAACCCGGTTTCACCGAAACATCATGAAGGATTAACGGCAGATCAGCACTTTAAAACCGGCAGAGCAGAGATCAGGAGCCCCGAGCAGCGTCCAGCCCGCTGACGGCTTCATTCCCGCGCTGACACTCACGTAAACACGGCCGCAGCTGTTGTCCGCATCGCTTTTGTCCGCCGTTTGTCCGGTTCCTGCCCGGTTTCTGCCTCCCGGAGCCCGGAGATGACCGGAGGAAGATGTCGGTGTCGGGACTGAAGGCCGAGCTCAAGTTTCTGGAGTCCATTTTTGACCCACATCACGAGCGCTTCAGGATCATCGACTGGAAACCGGACGAGCTGAGCTGCCAGTTTAACGTTACCGGAGAACAGCTGCTCATCATACACTGCAATATCACG
Seq C2 exon
GAGTCGTACCCGTCCACGCCGCCCATATGGTTTGTGGATTCGGATGATCCGAGTCTGACTGGAGTGCTGGAGCGTCTGGAGGAGGTCAGGAGGGGAAGCACACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000100766_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.330 A=0.000 C2=0.109
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0577317=RWD=FE(32.1=100)
Main Inclusion Isoform:
ENSDART00000172264fB6949
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGTCGAAACAAACGACGAA
R:
CAGTGTGCTTCCCCTCCTGA
Band lengths:
328-798
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]