DreEX0084477 @ danRer10
Exon Skipping
Gene
ENSDARG00000017119 | vps37a
Description
vacuolar protein sorting 37A [Source:ZFIN;Acc:ZDB-GENE-030131-8312]
Coordinates
chr1:15770142-15774197:+
Coord C1 exon
chr1:15770142-15770586
Coord A exon
chr1:15773909-15773983
Coord C2 exon
chr1:15774080-15774197
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTTTTATAATGTCTCTATAGTAT
3' ss Score
6.64
5' ss Seq
TATGTAAGT
5' ss Score
6.69
Exon sequences
Seq C1 exon
GAACGATGACGCTAGCAGCGCTAAACAGCTGACGTCATGCTCACACGGGTTGTTTTCTTGCGAGCTCGTGTACTTCAGACAACAGCTTAATCTATCATACTGTCATTAAAACTCAGCGCATTTTAGCGTCTTTCACAGCACTTACTTTTAAGTTTCTTGTCCGCTAATTTAAGCGGGCGTTCGGTCGCTAATACTTCTCAAACACTACACAGGCTCGTGGCTAATGCTAATGGTGGCGTCGGGTATTTCTTGAATTTCTGTTTCATTTCGTCAGGCCTTTTCAAACTGACACCGCCGAAGGATTCAAGCGTTACTTAGCGTGTTGGCAGCCGAGAATGAACTGGATTTTCCCCTTGTCCAAGGGCTCTGGATCGATCCCTCCTCTGAACAGTTTACAGAAACAAAGACAGAGACAGATCGAGTCTCTCAAAGCTGCTCACTCCAA
Seq A exon
TATTGCAGAAATCCAGAAGGATGTAGAGTACAGACTTCCTTTTACTGTCAACAATTCAACTATTACTGTCAATAT
Seq C2 exon
CTTGCTCCCCCCACAGTTCCCTCAGGAGAAACCAGTGGTTAGTGTTTTTCCTCCAGTGGGTCATCATTTAGTAGACGGCAACAATGGAACAATGGTTACCAGCCCACTCATAGCTAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017119-'2-2,'2-1,3-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.189 A=0.000 C2=0.061
Domain overlap (PFAM):
C1:
NO
A:
PF057438=UEV=PU(21.0=65.4)
C2:
PF057438=UEV=FE(48.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTACTTAGCGTGTTGGCAGCC
R:
CCACTGGTTTCTCCTGAGGGA
Band lengths:
173-248
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]