BtaEX0039720 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010355 | VPS37A
Description
Bos taurus vacuolar protein sorting 37 homolog A (S. cerevisiae) (VPS37A), mRNA. [Source:RefSeq mRNA;Acc:NM_001046161]
Coordinates
chr27:19036849-19052353:-
Coord C1 exon
chr27:19051959-19052353
Coord A exon
chr27:19038821-19038895
Coord C2 exon
chr27:19036849-19036963
Length
75 bp
Sequences
Splice sites
3' ss Seq
CTCAACATTTTCTCCTACAGCAT
3' ss Score
9.11
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GGGCTGTCTGGCTGGTTGGGGCGTCAGGGCCGCGGACCGCCAGCCTCGAGCTGCGAGTTCCCTTCTCTTCAGCTGCTGCGCTGACAGTAGCATGCCCCCCCGGCCCCGAGGACCCCCCGCCGGGCCGGCTTAGAGAAGACGCGGCTGCCCAGCACTTGGGCCGGGCCGTCCCTGCCCGCTCCTCCTCTGTCGCTGGAGAACCGCCGGGCTGAGCCGCTGGGAGAAGCAGGCCAGAGCCTTCCGGGGCCTCGGCCCGGGGACCCGTGGAGGATGAGCTGGCTCTTCCCCCTGACCAAGAGCGCCTCCTCCTCCGCAGCTGGGTCCCCCGGTGGTCTCACCAGCCTCCAGCAGCAGAAGCAGCGCCTGATCGAGTCCCTCCGGAACTCACACTCCAG
Seq A exon
CATAGCTGAAATACAGAAAGATGTGGAATACAGGTTGCCTTTCACTGTAAATAACCTGACAATTAACATTAATAT
Seq C2 exon
ATTGCTTCCTCCACAATTTCCTCAGGAAAAACCAGTGATCAGTGTTTATCCACCAATACGGCATCACTTAGTGGATAAACAAGGAGTGTATGTTACCTCCCCATTAGTAAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010355-'2-1,'2-0,5-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF057438=UEV=PU(23.2=73.1)
C2:
PF057438=UEV=FE(46.3=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCCCCTGACCAAGAGC
R:
AGTGATGCCGTATTGGTGGAT
Band lengths:
183-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development