BtaEX6106725 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000010355 | VPS37A
Description
Bos taurus vacuolar protein sorting 37 homolog A (S. cerevisiae) (VPS37A), mRNA. [Source:RefSeq mRNA;Acc:NM_001046161]
Coordinates
chr27:19036244-19038895:-
Coord C1 exon
chr27:19038821-19038895
Coord A exon
chr27:19036849-19036963
Coord C2 exon
chr27:19036244-19036344
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTCTGTTCTACTTTTGCCAGATT
3' ss Score
7.06
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
CATAGCTGAAATACAGAAAGATGTGGAATACAGGTTGCCTTTCACTGTAAATAACCTGACAATTAACATTAATAT
Seq A exon
ATTGCTTCCTCCACAATTTCCTCAGGAAAAACCAGTGATCAGTGTTTATCCACCAATACGGCATCACTTAGTGGATAAACAAGGAGTGTATGTTACCTCCCCATTAGTAAGCAAT
Seq C2 exon
TTTACAATGCATTCAGATCTTGGGAAAATTATTCAGAGTCTATTGGATGAGTTTTGGAAGAATCCTCCAGTTTTAGCTCCTGCTTCAACAGCATTCCCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000010355-'5-2,'5-1,6-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057438=UEV=PU(23.2=73.1)
A:
PF057438=UEV=FE(46.3=100)
C2:
PF057438=UEV=PD(28.0=67.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGAAAGATGTGGAATACAGGT
R:
GCAGGAGCTAAAACTGGAGGA
Band lengths:
146-261
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]