MmuEX6035391 @ mm10
Exon Skipping
Gene
ENSMUSG00000031600 | Vps37a
Description
vacuolar protein sorting 37A [Source:MGI Symbol;Acc:MGI:1261835]
Coordinates
chr8:40526927-40529209:+
Coord C1 exon
chr8:40526927-40527001
Coord A exon
chr8:40528318-40528432
Coord C2 exon
chr8:40529109-40529209
Length
115 bp
Sequences
Splice sites
3' ss Seq
CTCGTGTTATTCCTTTCTAGATT
3' ss Score
9.66
5' ss Seq
AATGTACGT
5' ss Score
6.58
Exon sequences
Seq C1 exon
TATAGCTGAAATACAAAAAGATGTGGAATACAGATTGCCATTCACAGTAAACAACCTGACAATTAACATTAATAT
Seq A exon
ATTACTTCCTCCACAGTTTCCTCAGGAAAAGCCAGTGATTAGTGTTTATCCGCCAATCAGACATCATTTAATGGATAGTCAAGGATTATATGTTACCTCTCCATTAGTAAGCAAT
Seq C2 exon
TTTACAATGCACTCAGATCTTGGAAAAATTATTCAAAGTCTTTTGGATGAGTTCTGGAAGAATCCTCCAGTTTTAGCTCCTACTTCAACAACATTTCCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031600-'8-7,'8-6,9-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057438=UEV=PU(24.1=76.9)
A:
PF057438=UEV=FE(45.8=100)
C2:
PF057438=UEV=PD(27.7=67.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAAATACAAAAAGATGTGGA
R:
TGGAAATGTTGTTGAAGTAGGAGCT
Band lengths:
171-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types