DreEX6030837 @ danRer10
Exon Skipping
Gene
ENSDARG00000017119 | vps37a
Description
vacuolar protein sorting 37A [Source:ZFIN;Acc:ZDB-GENE-030131-8312]
Coordinates
chr1:15773909-15777244:+
Coord C1 exon
chr1:15773909-15773983
Coord A exon
chr1:15774080-15774197
Coord C2 exon
chr1:15777147-15777244
Length
118 bp
Sequences
Splice sites
3' ss Seq
ATGTTGGTTGTTGTCTACAGCTT
3' ss Score
7.5
5' ss Seq
AATGTAGGT
5' ss Score
5.12
Exon sequences
Seq C1 exon
TATTGCAGAAATCCAGAAGGATGTAGAGTACAGACTTCCTTTTACTGTCAACAATTCAACTATTACTGTCAATAT
Seq A exon
CTTGCTCCCCCCACAGTTCCCTCAGGAGAAACCAGTGGTTAGTGTTTTTCCTCCAGTGGGTCATCATTTAGTAGACGGCAACAATGGAACAATGGTTACCAGCCCACTCATAGCTAAT
Seq C2 exon
TTTGGAATGCATTCAGATTTAGGCAAAGTAATTCAGAGTTTGCTAGATGAGTTCTGGAAAAGTCCTCCGGCCTTGACGTCAGATCCCACCTTTCCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017119-'3-3,'3-2,4-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.061 C2=0.015
Domain overlap (PFAM):
C1:
PF057438=UEV=PU(21.0=65.4)
A:
PF057438=UEV=FE(48.1=100)
C2:
PF057438=UEV=PD(28.4=69.7)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCAGAAGGATGTAGAGTACAGACT
R:
TAAGGAAAGGTGGGATCTGACGT
Band lengths:
162-280
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]