GgaEX0020308 @ galGal4
Exon Skipping
Gene
ENSGALG00000013646 | VPS37A
Description
vacuolar protein sorting 37 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:HGNC:24928]
Coordinates
chr4:62752306-62754243:-
Coord C1 exon
chr4:62754169-62754243
Coord A exon
chr4:62753308-62753422
Coord C2 exon
chr4:62752306-62752406
Length
115 bp
Sequences
Splice sites
3' ss Seq
AGTTATTCTTGTATTTACAGCTT
3' ss Score
6.66
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
CATTGCAGAAATTCAGAAAGATGTGGAATATCGACTGCCGTTCACTGTAAACAACTTCACAATTAATATTAACAT
Seq A exon
CTTGCTTCCGCCTCAGTTTCCTCAGGAAAAACCAGTCATCAGTGTTTTCCCACCTGTGAGACATCACCTGATGGACAAGCAGGGAGTATATGTGACTGGTCCATTAATAAACAAT
Seq C2 exon
TTTACAATGCACTCGGATCTTGGAAAAATTATTCAAAGTTTACTGGATGAGTTTTGGAAGAATCCACCAGTCCCGGCTCCTAGTTCAACATCGTTTCCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013646-'3-4,'3-2,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057438=UEV=PU(22.2=69.2)
A:
PF057438=UEV=FE(46.9=100)
C2:
PF057438=UEV=PD(28.4=67.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATTGCAGAAATTCAGAAAGATGTGG
R:
AACGATGTTGAACTAGGAGCCG
Band lengths:
170-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]