HsaEX0070586 @ hg19
Exon Skipping
Gene
ENSG00000155975 | VPS37A
Description
vacuolar protein sorting 37 homolog A (S. cerevisiae) [Source:HGNC Symbol;Acc:24928]
Coordinates
chr8:17104080-17126465:+
Coord C1 exon
chr8:17104080-17104878
Coord A exon
chr8:17125767-17125881
Coord C2 exon
chr8:17126365-17126465
Length
115 bp
Sequences
Splice sites
3' ss Seq
ATCTGTTCTACCTCTACCAGATT
3' ss Score
7.24
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
GCGCTAGATGATGACGCGACACGCAGAGGGGGCGGAGAGCGCCCCCGGGGGCGGGGCACGCAAGTGACGGCGGCGCGGGTGGTGGAGCGCTGGGCGGCCAGGCTCCCTGGCTGGCCGGTTTGGGCGTCTGGGCCGTGAAGGTGGGACCTCCTGTTCCGGGCCGCAAGTTTCCCTCTCCAGCCGCCCGCCGTTCGTAGCATGTCCCCCAGAACTCGGGGAGCGCAGGCAGGACAGGCTTAGAGAAGACGCGGTCCCCAGCGCTTGGGCCACGGACGTCCCACCCCGCTCCTCTGTCGCTGGAGAACCGCCGGGCCGAGCCACTGGGAGAAGCAGGCCAGAGCCTTCCAGGGCCTCCGGCCCGTGGACCCGAGGAGGATGAGCTGGCTTTTTCCCCTGACCAAGAGCGCCTCCTCCTCCGCGGCTGGGTCCCCCGGTGGCCTCACCAGCCTCCAGCAGCAGAAGCAGCGCCTGATCGAGTCCCTCCGGAACTCACACTCCAG
Seq A exon
ATTGCTTCCTCCACAGTTTCCTCAGGAAAAACCAGTGATCAGTGTTTATCCACCAATACGACATCACTTAATGGATAAACAAGGAGTGTATGTTACCTCTCCATTAGTAAACAAT
Seq C2 exon
TTTACAATGCACTCAGATCTTGGAAAAATTATTCAGAGTCTGTTGGATGAGTTTTGGAAGAATCCTCCAGTTTTAGCTCCTACTTCAACAGCATTTCCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155975_MULTIEX1-3/4=C1-4
Average complexity
C2*
Mappability confidence:
75%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.187 A=0.047 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF139001=GVQW=PD(42.1=20.5)
C2:
PF057438=UEV=PD(28.4=67.6)
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCTCTGTCGCTGGAGAACC
R:
TTTTCCAAGATCTGAGTGCATTGT
Band lengths:
242-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)