HsaEX0070586 @ hg38
Exon Skipping
Gene
ENSG00000155975 | VPS37A
Description
VPS37A, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:24928]
Coordinates
chr8:17265907-17268956:+
Coord C1 exon
chr8:17265907-17265981
Coord A exon
chr8:17268258-17268372
Coord C2 exon
chr8:17268856-17268956
Length
115 bp
Sequences
Splice sites
3' ss Seq
ATCTGTTCTACCTCTACCAGATT
3' ss Score
7.24
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
TATAGCCGAAATACAGAAAGATGTGGAATACAGATTGCCATTCACCATAAACAACCTGACAATTAACATTAATAT
Seq A exon
ATTGCTTCCTCCACAGTTTCCTCAGGAAAAACCAGTGATCAGTGTTTATCCACCAATACGACATCACTTAATGGATAAACAAGGAGTGTATGTTACCTCTCCATTAGTAAACAAT
Seq C2 exon
TTTACAATGCACTCAGATCTTGGAAAAATTATTCAGAGTCTGTTGGATGAGTTTTGGAAGAATCCTCCAGTTTTAGCTCCTACTTCAACAGCATTTCCTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155975-'13-11,'13-9,16-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.056 C2=0.000
Domain overlap (PFAM):
C1:
PF057438=UEV=PU(22.2=69.2)
A:
PF057438=UEV=FE(46.9=100)
C2:
PF057438=UEV=PD(28.4=67.6)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCCGAAATACAGAAAGATGTGGA
R:
GGAAATGCTGTTGAAGTAGGAGCT
Band lengths:
170-285
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development