RnoEX0098331 @ rn6
Exon Skipping
Gene
ENSRNOG00000012001 | Vps37a
Description
VPS37A, ESCRT-I subunit [Source:RGD Symbol;Acc:1560016]
Coordinates
chr16:54875236-54877590:-
Coord C1 exon
chr16:54877516-54877590
Coord A exon
chr16:54876015-54876129
Coord C2 exon
chr16:54875236-54875336
Length
115 bp
Sequences
Splice sites
3' ss Seq
TTATGTTATTCCTTTTCTAGATT
3' ss Score
10
5' ss Seq
AATGTACGT
5' ss Score
6.58
Exon sequences
Seq C1 exon
TATAGCTGAAATACAAAAGGATGTGGAATACAGATTGCCATTCACAGTAAACAACCTGACAATTAACATTAACAT
Seq A exon
ATTACTTCCTCCACAGTTTCCTCAGGAAAAACCAGTGATTAGTGTTTATCCACCAATAAGACATCACTTAATGGATAGTCAAGGATTATATGTTACCTCTCCATTAGTAAGCAAT
Seq C2 exon
TTTACAATGCACTCAGATCTTGGAAAAATTATTCAAAGTCTTTTGGATGAGTTCTGGAAGAATCCTCCAGTTTTAGCTCCTACTTCAACAACATTTCCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012001-'4-6,'4-4,5-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057438=UEV=PU(24.1=76.9)
A:
PF057438=UEV=FE(45.8=100)
C2:
PF057438=UEV=PD(27.7=67.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGCTGAAATACAAAAGGATGTGGA
R:
TGGAAATGTTGTTGAAGTAGGAGCT
Band lengths:
171-286
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]