HsaEX0070585 @ hg38
Exon Skipping
Gene
ENSG00000155975 | VPS37A
Description
VPS37A, ESCRT-I subunit [Source:HGNC Symbol;Acc:HGNC:24928]
Coordinates
chr8:17246571-17268372:+
Coord C1 exon
chr8:17246571-17247369
Coord A exon
chr8:17265907-17265981
Coord C2 exon
chr8:17268258-17268372
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTTAAAATTTTCTCCTGCAGTAT
3' ss Score
9.16
5' ss Seq
TATGTGAGT
5' ss Score
5.56
Exon sequences
Seq C1 exon
GCGCTAGATGATGACGCGACACGCAGAGGGGGCGGAGAGCGCCCCCGGGGGCGGGGCACGCAAGTGACGGCGGCGCGGGTGGTGGAGCGCTGGGCGGCCAGGCTCCCTGGCTGGCCGGTTTGGGCGTCTGGGCCGTGAAGGTGGGACCTCCTGTTCCGGGCCGCAAGTTTCCCTCTCCAGCCGCCCGCCGTTCGTAGCATGTCCCCCAGAACTCGGGGAGCGCAGGCAGGACAGGCTTAGAGAAGACGCGGTCCCCAGCGCTTGGGCCACGGACGTCCCACCCCGCTCCTCTGTCGCTGGAGAACCGCCGGGCCGAGCCACTGGGAGAAGCAGGCCAGAGCCTTCCAGGGCCTCCGGCCCGTGGACCCGAGGAGGATGAGCTGGCTTTTTCCCCTGACCAAGAGCGCCTCCTCCTCCGCGGCTGGGTCCCCCGGTGGCCTCACCAGCCTCCAGCAGCAGAAGCAGCGCCTGATCGAGTCCCTCCGGAACTCACACTCCAG
Seq A exon
TATAGCCGAAATACAGAAAGATGTGGAATACAGATTGCCATTCACCATAAACAACCTGACAATTAACATTAATAT
Seq C2 exon
ATTGCTTCCTCCACAGTTTCCTCAGGAAAAACCAGTGATCAGTGTTTATCCACCAATACGACATCACTTAATGGATAAACAAGGAGTGTATGTTACCTCTCCATTAGTAAACAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000155975-'0-9,'0-6,13-9
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.190 A=0.000 C2=0.056
Domain overlap (PFAM):
C1:
NO
A:
PF057438=UEV=PU(22.2=69.2)
C2:
PF057438=UEV=FE(46.9=100)
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGACCCGAGGAGGATGAG
R:
TCCTGAGGAAACTGTGGAGGA
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development