RnoEX0098330 @ rn6
Exon Skipping
Gene
ENSRNOG00000012001 | Vps37a
Description
VPS37A, ESCRT-I subunit [Source:RGD Symbol;Acc:1560016]
Coordinates
chr16:54876015-54899347:-
Coord C1 exon
chr16:54898983-54899347
Coord A exon
chr16:54877516-54877590
Coord C2 exon
chr16:54876015-54876129
Length
75 bp
Sequences
Splice sites
3' ss Seq
TTCTAAATTTTCTCTTACAGTAT
3' ss Score
9.71
5' ss Seq
CATGTACGT
5' ss Score
6.32
Exon sequences
Seq C1 exon
CGGGTGGTGTTGGCCGAGAGCGCACCGGGTCCTGTCCAGCAGGCGAGTCGCCCTTTTCCAGCCGTCCGCAGAGATAACTAATCCGGCTGGAGCCTGGGACTCGCGAGTACGGCGTGTCGGAGAAGGCGCGGCCCCTGGCGCCTGGTCCCGGCCGTGCTCGGTCGCTGAGGAACCACTGGGCTAAGCGAGGAAGAGCAGGCCGGAACCTTCTAGGGCCTCGGGCCCGGGGACCCGAGGAGGATGAGCTGGCTCTTTCCCCTGACCAAGAGCGCGTCATCCTCCGCGGCCGGGTCCCCTGCCGGCCTCACCAGTCTTCAGCAGCAGAAGCAGCGGCTGATCGAGTCACTCCGGAACTCCCATTCCAG
Seq A exon
TATAGCTGAAATACAAAAGGATGTGGAATACAGATTGCCATTCACAGTAAACAACCTGACAATTAACATTAACAT
Seq C2 exon
ATTACTTCCTCCACAGTTTCCTCAGGAAAAACCAGTGATTAGTGTTTATCCACCAATAAGACATCACTTAATGGATAGTCAAGGATTATATGTTACCTCTCCATTAGTAAGCAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012001-'2-4,'2-2,4-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.119 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF057438=UEV=PU(6.4=14.3)
A:
PF057438=UEV=PU(24.1=76.9)
C2:
PF057438=UEV=FE(45.8=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCCGAGGAGGATGAG
R:
TTCCTGAGGAAACTGTGGAGGA
Band lengths:
167-242
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]