DreEX0086087 @ danRer10
Exon Skipping
Gene
ENSDARG00000039263 | zbtb48
Description
zinc finger and BTB domain containing 48 [Source:ZFIN;Acc:ZDB-GENE-030131-4450]
Coordinates
chr23:25023844-25028614:-
Coord C1 exon
chr23:25028467-25028614
Coord A exon
chr23:25025001-25025723
Coord C2 exon
chr23:25023844-25024145
Length
723 bp
Sequences
Splice sites
3' ss Seq
CTTGTCGTCTGCTTGTCTAGATG
3' ss Score
7.58
5' ss Seq
GAGGTACTA
5' ss Score
6.36
Exon sequences
Seq C1 exon
GTTTCAACATGGCTTCTTGTTGTTTAGCCCAAATTAAGCATTTGATGCAGTATAATTTAACTCTTACTCAGTAAATTACACTACGCGTGTATGTGGATTTTCGAGGTATAACTGAAATATGGGAGCAACTTTCTAATTTACGGTAAAG
Seq A exon
ATGGAGAAACTTGCAGAAGGCTCCTCTCATGCTCAGCGGGTGCTGTCTTTGCTCAACAAGCAGAGAGCTTTTGGCCATTTCTGTGATGCCATGCTGTGCACAGCGAGCGGACAGGTGCATCTGGCCCATCGCAATGTCCTGGCCTGCTTCAGCCAGTTGTTCCAGGAACCCACCTCAAAAACACCATCTATAAAGTTTGACCTCCCTTTAGAGTGTCCCGATGATGGACTCGAGCTACTGCTGAATTTCTTCTACACTGGTGATCTCCAGCTAGACGACAGCAATCTGGAAAAAGTCCAAAATGCAGCCAGCGGATTATCGGTGCCTGTTTTTCTTATACCCTGCCAGGGTATAAAAACTCCTGACCTGAATGAAGGTGATCCATCAAAACCACTGCTTTCAGAGCCTCAGCCTGATCAGACTCCGAATAAAAAGACTAGATCTGGACAGAGGACCAAAAATAAAGCTGATGCATTTAAGTTGAGTACAGCAAGCGATGATGAGCCTCCTGCATTAAAGTCTACTACTGTCACACGTTCTGGAAGACGTGTAAAAGGGCCCAGTCGACTGGTTGGTGAAAGTCAAATTTCTGTTGTTACCAGACTAGGAGTGGGAAGGAGAAAAGCATCATTTGTAGAAGACAAAGAGCAGGAGACTGGAGCTACTGAAGATGGAGATCATCCCAGACATGAGGATGCAAGTGAGACTACCCAGACTACTGAG
Seq C2 exon
GTGGATATATCTGTTGATGACCAAAATGATGACGATGATGATGTTGAGGATGCTGCCAATAATGACGATGACAGTGACAGAGGTGGAAGTGTGGATATTATTATTGAGGGAACTGATGAAGAGTATGTGCCTCATGATTCACCTTGCTCAAGCACAAAGACTCCACGGGGAAAACGAAAAGAGAAAAGTAGCAATAAAAAGAATGGGGAAGGAACGTCAAAAGACAGCAAGAAAGGGGCCGTCCAGTGTCCAACGTGTCACAAAACGTTTCTCAGCAAATATTACCTCAAAGTACACAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039263-'1-1,'1-0,3-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.523 C2=0.743
Domain overlap (PFAM):
C1:
NA
A:
PF0065126=BTB=WD(100=42.7),PF041477=Nop14=PU(47.2=39.0)
C2:
PF041477=Nop14=FE(50.3=100),PF134651=zf-H2C2_2=PU(24.0=5.9)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCTTCTTGTTGTTTAGCCCA
R:
TGACGTTCCTTCCCCATTCTT
Band lengths:
358-1081
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]