DreEX0086445 @ danRer10
Exon Skipping
Gene
ENSDARG00000071683 | zfr2
Description
zinc finger RNA binding protein 2 [Source:ZFIN;Acc:ZDB-GENE-070705-184]
Coordinates
chr22:4702819-4708229:-
Coord C1 exon
chr22:4708115-4708229
Coord A exon
chr22:4705565-4705762
Coord C2 exon
chr22:4702819-4703168
Length
198 bp
Sequences
Splice sites
3' ss Seq
GAAATGATTTGCTGTTTTAGGTC
3' ss Score
9.24
5' ss Seq
CCGGTACGC
5' ss Score
8.81
Exon sequences
Seq C1 exon
GAGAATTATACATATGGGCGACCACCGCCTGTCAGCAGTTATGAGAACAAGCAGTACTTTCAAACCAGCATCGCACCAGCGCAACGACCTGCGACAGAGGCCTACTTCCAGACAG
Seq A exon
GTCTAAAAAGTGGCTACAGCCCGGCAAGCACAGCGTACAACCAGCCGCCGGTTCAAAGACAGGTGGCAGCCCTGAAACCTCCGCCCGCTGTGAGCTCCGTATCTTCCAGCTACACCATCTACCCCACATCCACCAGCGTTCAGCAAAGCCCAGCGCCCAGCTCCTCTTTCAACTCCACAGCTGCTACATCTTACTCCG
Seq C2 exon
CTGGTCTCAACTATTCCAGCTATGACTCTAGCGGTTACACATCTACACCTTCGTACTATCAGCCGGCTCAGTGTGCTCCGCCGCAGGCCCAGCCCCAGCCGCCTCTGCAGCCGCCGCAGCAACAGCCACAACCACAACCGCCACCGCCGCAGCAAACCCAGCAGCCGCCCAAACAGCTCGCCAATTCCTCCTGGAGCAACAGCGGTGGCAGCAGCGTCTCCAGTCCTGCTGTCAGCTCATACAGGAAGCCGGCTTTCCACCAGAACAAGATACAGAAGCCTAAAGGTCCACCGAAGCAACCGCAGCTGCACTACTGCGATATCTGCAAGATCAGCTGCGCCGGTCCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071683-'9-4,'9-3,10-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.846 A=0.866 C2=0.737
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF128742=zf-met=PU(52.0=11.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTCAAACCAGCATCGCACC
R:
GGAGGAATTGGCGAGCTGTTT
Band lengths:
250-448
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]