HsaEX6091909 @ hg19
Exon Skipping
Gene
ENSG00000105278 | ZFR2
Description
zinc finger RNA binding protein 2 [Source:HGNC Symbol;Acc:29189]
Coordinates
chr19:3831301-3833776:-
Coord C1 exon
chr19:3833662-3833776
Coord A exon
chr19:3831658-3831876
Coord C2 exon
chr19:3831301-3831554
Length
219 bp
Sequences
Splice sites
3' ss Seq
GGCCTGTCCCTGTCCCCTAGGGA
3' ss Score
10.16
5' ss Seq
CGGGTAAGA
5' ss Score
9.84
Exon sequences
Seq C1 exon
GACAGTTACAGCTACGGACAGTCAGCAGCTGCCAGGAGCTATGAGGACAGGCCGTACTTCCAGTCTGCTGCCCTCCAGTCTGGGCGCATGACAGCCGCAGACTCCGGCCAGCCAG
Seq A exon
GGACCCAAGAAGCCTGCGGGCAGCCCAGCCCCCATGGCAGTCACAGCCACGCTCAGCCCCCACAGCAGGCGCCCATAGTGGAGTCCGGACAGCCAGCGAGCACCTTGTCCTCGGGATACACCTACCCCACGGCGACAGGCGTCCAGCCCGAGTCGTCAGCTTCCATCGTGACCTCCTACCCCCCGCCCTCCTACAACCCCACCTGCACCGCCTACACGG
Seq C2 exon
CACCAAGCTACCCGAACTATGACGCGTCGGTGTACTCCGCTGCCAGCCCTTTCTATCCTCCAGCGCAGCCCCCGCCTCCCCCGGGACCCCCGCAGCAGCTGCCCCCGCCGCCCGCGCCTGCAGGCTCAGGAAGCAGCCCCAGGGCCGACTCGAAGCCACCGCTTCCCAGCAAGCTGCCGAGACCCAAGGCGGGGCCCAGGCAGCTCCAGCTTCACTACTGCGACATCTGCAAGATCAGCTGCGCTGGCCCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000105278-'5-6,'5-5,6-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.906 A=0.878 C2=0.635
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF128742=zf-met=PU(52.0=15.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCTATGAGGACAGGCCGTA
R:
GTCGCAGTAGTGAAGCTGGAG
Band lengths:
304-523
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)