DreEX0088207 @ danRer10
Exon Skipping
Gene
ENSDARG00000019961 | znf513
Description
zinc finger protein 513 [Source:ZFIN;Acc:ZDB-GENE-030131-9895]
Coordinates
chr20:19524240-19529038:+
Coord C1 exon
chr20:19524240-19524467
Coord A exon
chr20:19524795-19524910
Coord C2 exon
chr20:19528904-19529038
Length
116 bp
Sequences
Splice sites
3' ss Seq
TTATTTTAACGCTTATAAAGGCT
3' ss Score
3.65
5' ss Seq
AATGTAAGC
5' ss Score
6.12
Exon sequences
Seq C1 exon
GTACCCGGAAACGCGTAGTCGAGGAAACGGATATACGCAACGTTGCGGAAGAAAATGTATACAATGGCAATTTGGAAATCAATTAAGTTGTGAAAAAAGAGCATTAATTGCCTTTCTTTGTGGTGGCTGTGTTATGGAATGGCGGACCGTGAGCAGTAGCGCTCCGTCAGACGCCGCGGTTTCTCCTCGACGGCTGCTGTTATTTGACGCGTTGGGCAGAAAGAGCAG
Seq A exon
GCTACTTTGGAGAATGAGTTGATTGTTTCGCGAGGGAATCCAGAGGAGGTTGCACATATAAAAGGCTGTCTGGAAGATGCCAAGAAGAAAACAGCAGAATCCACAACCTGTCAAAT
Seq C2 exon
TGGATTCTGAAGATGGTGTAGGCACTGTACGTCCAACAAACCTTACTTTTGAGAGCGATTTTCTCCTGGGACAAGAACTCGAGTTCTCAGATCCTGACAATGACCAAAAGATCATAGGCCTTGAAAAGTTCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019961_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=1.000 C2=0.359
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAACGCGTAGTCGAGGAAACG
R:
GTTGGACGTACAGTGCCTACA
Band lengths:
257-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]