DreINT0181468 @ danRer10
Intron Retention
Gene
ENSDARG00000019961 | znf513
Description
zinc finger protein 513 [Source:ZFIN;Acc:ZDB-GENE-030131-9895]
Coordinates
chr20:19524240-19524910:+
Coord C1 exon
chr20:19524240-19524467
Coord A exon
chr20:19524468-19524794
Coord C2 exon
chr20:19524795-19524910
Length
327 bp
Sequences
Splice sites
5' ss Seq
CAGGTATAT
5' ss Score
7.88
3' ss Seq
TTATTTTAACGCTTATAAAGGCT
3' ss Score
3.65
Exon sequences
Seq C1 exon
GTACCCGGAAACGCGTAGTCGAGGAAACGGATATACGCAACGTTGCGGAAGAAAATGTATACAATGGCAATTTGGAAATCAATTAAGTTGTGAAAAAAGAGCATTAATTGCCTTTCTTTGTGGTGGCTGTGTTATGGAATGGCGGACCGTGAGCAGTAGCGCTCCGTCAGACGCCGCGGTTTCTCCTCGACGGCTGCTGTTATTTGACGCGTTGGGCAGAAAGAGCAG
Seq A exon
GTATATTTCTGACATCTGCTGAGCTTGACAATATATAGCAGGAGTTCAGTGTTTAGATTTTTGCGTTAAATGTCGACTAAATAAACACGCAGGTAGGGCGAAATGAGTTCTGCAGTTCAGTACGTGTGCAACACAAAAACTGAGCTTTTTTCAGTCGCACTGAGTTTAAAATCCCCTTTATTCGCTGTAAATGACGCCAGTTTTATTTATTTTAAACAACAGTCTGAGATTAGCATGTTAGCCTGTACGTGCTGCGTGTGTTTGTAAAGGTTATATGGGCTGCGTTTATGTTTGTGTCAGTAATGTGTTATTTTAACGCTTATAAAG
Seq C2 exon
GCTACTTTGGAGAATGAGTTGATTGTTTCGCGAGGGAATCCAGAGGAGGTTGCACATATAAAAGGCTGTCTGGAAGATGCCAAGAAGAAAACAGCAGAATCCACAACCTGTCAAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019961:ENSDART00000152216:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAACGCGTAGTCGAGGAAA
R:
GACAGGTTGTGGATTCTGCTGT
Band lengths:
334-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]