DreEX0088208 @ danRer10
Exon Skipping
Gene
ENSDARG00000019961 | znf513
Description
zinc finger protein 513 [Source:ZFIN;Acc:ZDB-GENE-030131-9895]
Coordinates
chr20:19528904-19530933:+
Coord C1 exon
chr20:19528904-19529038
Coord A exon
chr20:19529619-19529923
Coord C2 exon
chr20:19530241-19530933
Length
305 bp
Sequences
Splice sites
3' ss Seq
TCATCATCTCCTCCTCTCAGGGT
3' ss Score
10.14
5' ss Seq
AGTGTAAGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
TGGATTCTGAAGATGGTGTAGGCACTGTACGTCCAACAAACCTTACTTTTGAGAGCGATTTTCTCCTGGGACAAGAACTCGAGTTCTCAGATCCTGACAATGACCAAAAGATCATAGGCCTTGAAAAGTTCTCAG
Seq A exon
GGTTTTTATCATAGTTGTCATCATCATCATCATCATCATCTCCCCTCATCATCATCATCATCATCATCATCATCATCAGGACCATTATAGTCATCATCATTATCATTAGGCTGGGTAATCATCCACCTGGGGTTTCTGAAACGGGCGATATAAAGGCCCGTTCAGACTTCAGCCTCATTTCTACACTGCATGTGCACGAGGACGGAGCTTGCAGAGGGAAAACATAATTTCACAGAAACTCTGTAGCTCTGCGTTTTGTTGGAGTACCACTTGTTTATTTTCAGAATTGTATCCACTGGCTTAGT
Seq C2 exon
CTGACATCAGTCTGCCTGGCTTCCCCCTGGGAGACGAGGAGAACTCCCCCTTCAGTCGACTCAGTATGGAGAGTGACGCTGACGACCTCCGCGCAACCGAAAGCGAACGTGAAGAGAGGGTTTCTGAGTCTGCCTTTCCCTCTTACCTTTCTTGCAGGGGCTGTGGTCAGCTCCTGGAAGACCCCTTGGGACCCGGCATGGACTTAGTGGGGCCCTACTGCATGCGCTGCTGCAAAGGGAATGTGGAAGGCATTGTGGACAGGAAGCTTTGCTCGGGCTTAGGCTTACAAGCAGAGTCTAGAGGGGGAGGGAATGAGGGGACTGGTGAGGACGGTTCCCTGAAGCTCCACTCATGCACGCTCTGTGGGTTCACATCACGCTACACTAATCATGTTAAAAGGCACATGAAGACGCACAACGGCGAAAAGCCGTACGGCTGTCCGCTGTGCTCCTACGCATCGGCACAACTAGTGAACCTGCAAAGGCACTTGCGCATACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019961_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.359 A=0.000 C2=0.379
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF134651=zf-H2C2_2=WD(100=11.2),PF134651=zf-H2C2_2=WD(100=11.2)
Main Inclusion Isoform:
ENSDART00000152216fB7379
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGGACAAGAACTCGAGT
R:
GAGCAAAGCTTCCTGTCCACA
Band lengths:
346-651
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]