DreINT0181470 @ danRer10
Intron Retention
Gene
ENSDARG00000019961 | znf513
Description
zinc finger protein 513 [Source:ZFIN;Acc:ZDB-GENE-030131-9895]
Coordinates
chr20:19528904-19530933:+
Coord C1 exon
chr20:19528904-19529038
Coord A exon
chr20:19529039-19530240
Coord C2 exon
chr20:19530241-19530933
Length
1202 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TAATGCTGTGGTCTGTACAGCTG
3' ss Score
5.97
Exon sequences
Seq C1 exon
TGGATTCTGAAGATGGTGTAGGCACTGTACGTCCAACAAACCTTACTTTTGAGAGCGATTTTCTCCTGGGACAAGAACTCGAGTTCTCAGATCCTGACAATGACCAAAAGATCATAGGCCTTGAAAAGTTCTCAG
Seq A exon
GTGAGATATGCAAGTTTACAATCTAAGCTTGTTATTGAAATGTTCCTGTCATCAATTACTTAATCTGTGTTTATGCCATGAAACTCGTCAGTTCTGATTTTGAAAACAGCACAGGTCTTCACAGTAATTGAAAAAAATAAAAAAAAATTAATCATGTATAAAAAGTTATGGACTGTTATTGTATGATGGCCATTATCAAATCCCAAAGATTCAAAACTTAGTTTGCTTAATTGCTGGAATTCATGAGGAGCCATACTCAGTAGGACATTACATTAAGGACACTAACTGCAGAAACTCACTTCGAATGTTCACATGATTATGCAAACGTGCTGCATTTCTTTCTGTTAGCAAGCAGTGTGATCTTTCATGTACAGATGGAAGAAGCCTGCTGCCTTGGAAAATTTCTTTGGTTTTGGCATTCTGACAGAACATAACATATCAAAATGGCAAATCAGGAAAAAATAGTGTGCCACTACTATTATATAAGGGTCATCAAGACAGTCATCACCATCAAGGACAGATTATAATAAGGCATATAGTCATCATCATCATCATCATCATCATCATCTCCTCCTCTCAGGGTTTTTATCATAGTTGTCATCATCATCATCATCATCATCTCCCCTCATCATCATCATCATCATCATCATCATCATCAGGACCATTATAGTCATCATCATTATCATTAGGCTGGGTAATCATCCACCTGGGGTTTCTGAAACGGGCGATATAAAGGCCCGTTCAGACTTCAGCCTCATTTCTACACTGCATGTGCACGAGGACGGAGCTTGCAGAGGGAAAACATAATTTCACAGAAACTCTGTAGCTCTGCGTTTTGTTGGAGTACCACTTGTTTATTTTCAGAATTGTATCCACTGGCTTAGTGTAAGTATAAATTGCACATTTTCTGTAGAACTTAATCTGTTAATATTTTGTTGAGAAATGTCAAGTTTTATTAGGGTCTTGGGAGAAATATATTTGAATGATTTTTGTCTGTGTGATTGTCTTTAATAGTCAGTAACTATTAATACTAAGATAATAGTGTTAGTATATACTTCATTTATTATTACATATTTACATAATACAATTTCTCCTTTTTTTTAAGCAGTAAATTGCTGAAATTCTGTTGCATTTGAAAGTAGTTTCAGTTTGCTGAAAACATATCGATACATCTGCATAATGTAATGCTGTGGTCTGTACAG
Seq C2 exon
CTGACATCAGTCTGCCTGGCTTCCCCCTGGGAGACGAGGAGAACTCCCCCTTCAGTCGACTCAGTATGGAGAGTGACGCTGACGACCTCCGCGCAACCGAAAGCGAACGTGAAGAGAGGGTTTCTGAGTCTGCCTTTCCCTCTTACCTTTCTTGCAGGGGCTGTGGTCAGCTCCTGGAAGACCCCTTGGGACCCGGCATGGACTTAGTGGGGCCCTACTGCATGCGCTGCTGCAAAGGGAATGTGGAAGGCATTGTGGACAGGAAGCTTTGCTCGGGCTTAGGCTTACAAGCAGAGTCTAGAGGGGGAGGGAATGAGGGGACTGGTGAGGACGGTTCCCTGAAGCTCCACTCATGCACGCTCTGTGGGTTCACATCACGCTACACTAATCATGTTAAAAGGCACATGAAGACGCACAACGGCGAAAAGCCGTACGGCTGTCCGCTGTGCTCCTACGCATCGGCACAACTAGTGAACCTGCAAAGGCACTTGCGCATACACACTGGGGAAAAGCCCTATAAGTGCAACACTTGCACATTTGCTTGTAGTTCCCTAGGGAACCTGAAGAGGCACCAGCGCATGCATGCAACCATAGGCCCGGGTCAGAGTGTCACTCAACCAGTCAGTGGCAATGGTTTAAACCACTCTACTGCAGCTCAGAAGGAAAAGGAAGCAGTTCCTGCTCCCACTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019961:ENSDART00000152216:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.359 A=NA C2=0.379
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=11.2),PF134651=zf-H2C2_2=WD(100=11.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCTGGGACAAGAACTCGAGT
R:
GAGCAAAGCTTCCTGTCCACA
Band lengths:
346-1548
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]