BtaINT0165644 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019518 | ZNF513
Description
zinc finger protein 513 [Source:HGNC Symbol;Acc:HGNC:26498]
Coordinates
chr11:72274116-72275840:+
Coord C1 exon
chr11:72274116-72274277
Coord A exon
chr11:72274278-72275255
Coord C2 exon
chr11:72275256-72275840
Length
978 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TCTTCTGTCTGTCTCACCAGGAG
3' ss Score
11.53
Exon sequences
Seq C1 exon
TGGATACCGAAGACTCCCTCGACGAAGGACCCGGGGCCCTGGTATTGGAGAGTGATTTGCTACTAGGCCAGGATCTGGAGTTTGAAGAAGAGGAGGAAGAGGAAGAGGAGGAAGGTGACCGCAACAGCGACCAGCTCATGGGCTTCGAGAGAGACTCTGAAG
Seq A exon
GTGGGTTTGGGGGCACTTAAGAAAGTGACCACTGGAACCCCAGCCTTTAGAAGGTGGGTTAGGTTTAGTGCTTGTGAGCAAAACACGCATTCCTGCCAGTGCGACTGGTTTAGTGTAAGTTTAGATTTGAGCTAGATTTCTTCATTTGTCTGATGGTCCTTCACTTTGTTGATGTGAAGTTTTGGGGCCTGGTTCAAAGATGTTATGAATAGTACAGTGGAGGAATCACAAAGAGCGACTGACTACAAGTAAATGCCCTTTTAATAACCTTGTCTTGCTCCCTAGTCCATTCATTCATTAGGAGTTTAAGAGGTTTAGGGAAGCAACCTCATTCATGCTGGTACTTCTGACTCCATTTCACCTGCAACATAAACTCCTTTTGTACTGAGGTTTTAATCTCTACCCTCAAATATCCTTCACAGTCTTCCCTGTGATCTTAGCATCACCCCATCCTAAGTTGCTGCACTACTTATCTATCCACTTAATGTCACTTCTGGAAGATGCTTTTGAAAGTCATTGAAGGGATCCACATAAAAGGGAATCCATCCTTTAGGCTTAGAAGTAGGTATTACACGCATTACTTTGTTTCTTCTTCACTCCAAATTTTGCCTCTTGAGGTAGTATGGAGCTGATTATAAATTAAAAACTGAGTCCTCACTGATGGATGAATTAGAAAAACGTCTCAGGCCTTTGCCTTGTGTATTTTTGCTTTCTTATCCCAAGAATTACTTGTTGATTGATTTCAATCGGTGGTCCACTGTGAACCACACATTTTCTTCCATTCCATGAACCTATGTACAACTCTGTCATCACTGGGTTAGTCCAGGCTCAGAGGTAGCTAATTCATGTTGATTGTTTAGGGTCACTGAATTGAAGAGAAGGGTGGAGCCCAGCAAGTGGTGAGGCTACAAGTGAGAAAAAGGGAGTTTTGAGTCTGGTTCTGCCCTGTGTTGATGTCTCTTCTGTCTGTCTCACCAG
Seq C2 exon
GAGACTCTCTGGGGGCCAGGCCTGGGCTTCCCTACGGGCTGAGCGACGACGAGTCTGGGGGCGGCCGCGCACTAAGTGCGGAGAGTGAAGTTGAGGAGCCAACCAGGGGTCCAGGGGAGGCCAGGGGTGAGAGGCCAGGCCCAGCCTGCCAGCTGTGTGGGGGGCCCACAGGTGAGGGGCCGTGTTGTGGGGCAGGACCGGGTGGGGGGCCCCCGCTGCCCCCACGTCTACTGTATTCATGCCGCCTCTGCGCCTTCGTGTCCCACTACTCGAGCCACCTGAAGCGGCACATGCAGACACACAGCGGGGAGAAGCCGTTCCGCTGTGGCCGCTGCCCCTACGCCTCAGCCCAGCTCGTCAACCTGACACGACACACCCGCACCCACACTGGCGAGAAGCCCTACCGCTGTCCCCACTGCCCCTTTGCCTGCAGCAGCCTGGGCAACCTGAGGCGGCATCAGCGCACCCATGCAGGGCCCCCCACCCCTCCCTGCCCGACCTGTGGCTTCCGCTGCTGTGCTCCACGTCCTGCCCGGCCTCCCAGTCCCACAGAGCAGGAGGGGGCAGTGCCTCGGCGACCCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019518:ENSBTAT00000025999:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.474
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=13.3),PF134651=zf-H2C2_2=WD(100=13.3)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAAGAGGAGGAAGGTGACC
R:
TTCAGGTGGCTCGAGTAGTGG
Band lengths:
346-1324
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development