RnoINT0168334 @ rn6
Intron Retention
Gene
ENSRNOG00000005298 | Zfp513
Description
zinc finger protein 513 [Source:RGD Symbol;Acc:1310456]
Coordinates
chr6:26538220-26539409:+
Coord C1 exon
chr6:26538220-26538375
Coord A exon
chr6:26538376-26539132
Coord C2 exon
chr6:26539133-26539409
Length
757 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TTCCTTTTCTGTTTCACCAGGAG
3' ss Score
9.87
Exon sequences
Seq C1 exon
TGGATACTGAAGATTCCTTCGACGAAGGACCTGGGGCTCTGGTGTTGGAGAGTGATTTGCTACTAGGCCAAGATCTGGAGTTCGAAGAGGAAGAGGAAGAGGAGGAAGGTGACGGCCACAACGACCAGCTCATGGGCTTTGAGAGAGACTCTGAAG
Seq A exon
GTGTGTTTAAGGGTCGTGGTTAAGGATAAGAGGCTTTTGGTAACTCAAGCCCTTTAGAAGGCGGTGTTAGCGACCAAAACACCACTTCTTTTTACAACCTAGCAGCAGCATTTTGGTGAGTTGAAGTTCTGGGTCCGGGCTAAAGGTGGTGTGAATACAAGGGTGGGTAGCCACATTTCTTATGTACCCCTCAAGAGGTTCATGGAAGGGAATTATGTAAATAAGCTACTCTTAAAACTCTCTGGCTAGTAGCAGTAGATTCTTTTTGTTCTGAGGTTTCAGTTTCTGCCCTTAAGTCTCTCCTCGTTTATTTCTTGGGTATTTTTTAAAGTCAGAGGAAACCATATAAAAGAATCTGCCCTTTCTGTGTAATTTGCACTACATTGCTCCCACTTTCTCCAAATTGTGCCTACTTGAGATGGCTTTCATTTCATAATCAGCCTTATATAAAAAGGAGCCTTACTAAACCAGGGTTTACAAAAAAGATCTTGGGGTCTTTATATTTTTACTTATCTCATATTGTTGCTTCACATCAGCCTGTACTCCACTTCAAGCCTGTGATATTTTCCATTTGTTGGAAATGATAAGTCACCCCTAGTGTTAGTAATTAGGCTCAAATAGAATGAAATCAAAGGTGAGGCAGAATAAGTGGGGCTTTTTGTGAGAAATGAGAATTTGGAACTCAGTCTTGAGCCATGTTGATTGGTTTCTTTCTTTTTTTTTCTTTTTTTTCCTCCTTCCTTTTCTGTTTCACCAG
Seq C2 exon
GAGACTCTCAGGGAGCCAGACCTGGACTTCCCTATGGGCTGAGTGACGATGAGTCTGGGGGCGGCCGGGCACTAAGTGCGGAAAGTGAAGTTGAGGAGCCAGCGAGGGGTCCAGGGGAGGCCAGGGGTGAGAGGCCAGGCCCAGCCTGTCAGCTGTGTGGGGGGCCGACAGGTGAGGGGCCGTGTTGTGGGGCAGGAGGGCCGGGTGGGGGGCCCCCGCTGCCCCCACGGCTACTGTACTCATGCCGCCTCTGCGCCTTCGTGTCCCACTACTCGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005298:ENSRNOT00000050102:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.634
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAGTGATTTGCTACTAGGCC
R:
GCATGAGTACAGTAGCCGTGG
Band lengths:
355-1112
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]