MmuINT1035625 @ mm10
Intron Retention
Gene
ENSMUSG00000043059 | Zfp513
Description
zinc finger protein 513 [Source:MGI Symbol;Acc:MGI:2141255]
Coordinates
chr5:31200235-31201738:-
Coord C1 exon
chr5:31201583-31201738
Coord A exon
chr5:31200823-31201582
Coord C2 exon
chr5:31200235-31200822
Length
760 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
3' ss Seq
TTTCCCTTACGTTTCACCAGGAG
3' ss Score
9.54
Exon sequences
Seq C1 exon
TGGATACTGAAGATTCCTTCGACGAAGGTCCTGGGGCCCTGGTGTTGGAGAGCGATTTGCTACTAGGCCAAGATCTGGAGTTTGAAGAGGAAGAGGAAGAGGATGAAGGTGACGGCCACAACGACCAGCTCATGGGCTTTGAGAGAGACTCTGAAG
Seq A exon
GTGTGTTTAAGGGTCGTGGTTTAGGATTAGTGGCAATTGGTAACTCAAGCCCTTTAGAAGGCGGTGCCAGCGACCCGAACACCACTTTCTACAACCTAGAACTCCCTAAAGGTCCCTCAGCAGCATCATTTTGCTGAGGTGAAGTTCGGGTTCGGGCTAAAGGTGGTGTGAATACAGGGGTGGGTAGCCCCAGTTCTTATGCGCACCTCAAGAGGTTCATGCAAGGGAATTATGTAAATAAGCTACTCTTAAAACTCCTTTTTGACCAGTAGCAGCAGATCCTTTTTGTACTGAGGTTTCAGTTTCTATCCTTAAGTCTCTCATTTATTTTTGGGGTATTTTTTAAAGTCAGAGAAAAACCATATAAACGAATCTGCCCTTTCTGTGTAATTTGCACTACATTGTTTCCACTTCCTCTAAATTGTGCCTGCTTGAGAAGGCTTTCATTTCATAACCAGCCTTATATAAAAAGGAGCCTTACTAAACCAGAGCTTACAAAAAAGATCTTGGGATCTTTATATTTTTTTCTTGTCTCAAGAATTAACGTTGCTTCACGTCAGCCTGCACCCTACTTCAAGCTCATGATATTTTCCATTTGTTAAAAATGACATGTCAACCCTGGTGTTAGTAATTAGGCTCAGAGGTAGGACCAAATCAAGGATGAGGCAGGGTAAGTGGGGCTACATGTGAGAAGTGAGAGTTTGGAACTCAGTCTTGAGCCATGTTGACCGGTTGTTTTTTTTCCCTTACGTTTCACCAG
Seq C2 exon
GAGACTCTCAGGGGGCCAGACCTGGACTTCCCTATGGGCTGAGTGACGACGAGTCTGGGGGCGGCCGCGCACTAAGTGCGGAGAGTGAAGTTGAGGAACCAGCCAGGGGTCCAGGGGAGGCCAGGGGTGAGAGGCCAGGCCCAGCCTGTCAGCTGTGTGGGGGGCCGACAGGTGAGGGGCCGTGTTGTGGGGCAGGAGGGCCGGGTGGGGGGCCCCCGCTGCCCCCACGGCTACTGTACTCATGCCGGCTGTGCGCCTTCGTGTCCCACTACTCGAGCCACCTGAAGCGGCACATGCAGACACACAGCGGGGAGAAGCCGTTCCGCTGTGGCCGCTGCCCCTACGCCTCAGCCCAGCTCGTCAACCTGACGCGACATACCCGCACCCATACTGGCGAGAAGCCCTACCGCTGTCCCCACTGCCCCTTTGCCTGCAGCAGCCTGGGCAACCTGAGGCGGCATCAGCGCACCCACACAGGGCCTCCCACTCCTCCCTGCCCAACCTGTGGCTTTCGATGCTGTGCTCCACGACCAACCCGGCCTCCCAGTCCCACAGAGCAGGAGGGGACAATGCCCCGACGATCAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000043059:ENSMUST00000114590:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.515
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=13.2),PF134651=zf-H2C2_2=WD(100=13.2),PF134651=zf-H2C2_2=WD(100=12.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGGATGAAGGTGACGGC
R:
TTCAGGTGGCTCGAGTAGTGG
Band lengths:
347-1107
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types