GgaINT0081513 @ galGal3
Intron Retention
Description
NA
Coordinates
chr3:107371563-107373930:+
Coord C1 exon
chr3:107371563-107371664
Coord A exon
chr3:107371665-107373750
Coord C2 exon
chr3:107373751-107373930
Length
2086 bp
Sequences
Splice sites
5' ss Seq
TAGGGTGCG
5' ss Score
-15.04
3' ss Seq
CATCCCCATGCTCTTCTCAGCAG
3' ss Score
5.36
Exon sequences
Seq C1 exon
CGGATGCGGAGGACGGCCCCGATGAGACGGCGGGAGCGGCGCTGGTGCTGCCCGACGACCTGCTGCTGGGCCGCGGCCTGGCCTGCGAGAAGGGACCGCTAG
Seq A exon
GGTGCGTGCCGCCGTCTCGCACGGTCCGCCGCGATCCTCGGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCTCCCATTCCGCCGGAAAAGATCCACCCTCCCCAGGTAAACGAAGAGGACCCCCTGGAGCGCCGCCATACACCCCATGGGGTCCCTCTACCCTCCCATTGAACGCCCTCGGTCTTAAGGGAGAAGCCGGGGGACCCCCTCCGACACCCCCACAGGGTGTCCCTTAGAAGCAGCAAGCACTTCCCACCCCCGGGATTCCCGGGGGGCCCTCCGGAGCCCGCGACTGACAGCCCGTGTGCCCTACAGGCCAGAAGCCGCTTTGGTCAGCGGTGTTCTACAAGACATGTGCGGGGTCCTACCCGGGACGTGGGGGCAAATGCCGCCGCCCCCTGCGTGGCCCCGGGGGTGGGGGAGCAGCGCTGCCTTTCCTCCAGCGGCTGTTCCTCACTGCGCTGCTGCCCCGCACTCCTGTGCCGTTTGCAGCCGTTGGCTGCAGCCCCCAGTGCTCCAGGGCAACCAGATAGAGGAGGTAACACTTCTGCTCAGCTCCGGTGCCTCGCAGGGAGCAGTGAGAGTGGCTCACCTCCCTCGGATGCCGGGCGGGGAATAAGATGGGGACGTGTCCGACACAGAGCACCACGCGCCACCCAGCTCCTGCACCCCATCTGCTCCCCTGAGGGCCGTGCTCTGGGTGCAGGATGCCACGCTCTGTGCTGAGGATCGGCCCCAGCTGCCTGGCAGATGGGCTCTGCTCCGAGGGCTGCACCTCCCTGCAGTGCGTGCACGCAGCCCTGTGTTGGGACAAAGCTGGCTCCGCGGTGCCGGATGCTGCCCGTGCTGCAAAAAGCTGTTCTCTGCAGCAGCTCTTTGCAACTAGAAAAACATCCCTTTCTGCCCCCAGCTCCAGCCCAGCTGGGGAGCAGTGTCTGGCAGGTCTGGATTCCTGAAGAGCCAACACTGGTTATGTTCTCAGCCCCACGGGCGGTGCTGTCCCAGCGGGGCAGTGCTTCAGGGATGCTGGGCTGTGCCACCAAGCTTGGAGGGAGGACCCTTGGCATGGGGCTTAGGATCAAGATGTTCCCCTAGCAATAGCAAGGCTGTAGCGGGATGCTCTGGTTTGGCATCAGATCTTCCTAGTGTTTATGAATCTGGGACTAGGAAACACGAGGGAGCATGGAGCGGCCTCACCGTGCCCAGGGACCCTGGGACACAGACCCTGCAGGGTGAGTGGCAGCAAAGGGGACAATCCAGGGTGACAGCCAACTGCTGGGTCTTGCAGCCTCTTGCATGGACTCCAGGTTGGGCACAACACAGGAATGGATGGAGGTGGCTTGAGGCTGACTGTGGCAAGGCTTTGCTGTGTGCCACTACCCTTCTGTCCTGAGCAGCAGCCTGTGGATGCACCCAAGGGCTCCAGGTGTCCCAGATGTGGGTCCTAGATGTGGGTGGCTGCAGGTCAGTGGCTCTGCTTCTGCCATCCCATGCTGGGGCATTGGTGTTACACATCCATGTCCAGCTGGCAAGCAGAAATGCCCTCCAAGAGCCTCCCTGTGGGGCAACAGCACTGCGTGGGGCCGGAGGACGTCTTTTCCGCTGCCTGTTGCTGGCCATGGGACCAGGACCAGCAGCCTGGTGAGCTGTGCCCACCAACACCTGGCACAACTGGCTGAGGCCCTGCAGCAGGACCTGGGGGCAGCTTGGGCTGCCTCAGCCTGCCGTCTGAGCGTTGGGGCTGCAGCAGGCTCCCGGGTGCCACCGGGGCGAGCGCAGCTGCCTGACGCCTCCTGGCTGCGGTCCCCCATCCTGGGATCAGTGGCAGCAAAATGGGGCCAGGCATGAACCAAACCGAGCTCCCTCTGCTATCCCATCCCCATGCTCTTCTCAG
Seq C2 exon
CAGAGGCACTGGTGGGGAAGATCGCCATCCCAGCGTACGCGCTGAGCGACGACGACTGCTCCTCCGGGTACCAGCAGCTGAGCGTGGACAGCGACCCCGAGGAGGGCGGCGAGCCCGGCCCCGCAGCGCTGCCCTGCCGCCAGTGTGGGCTGCAGCTGGCTGCCAGCCTGGGCCAGAGCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000022855:ENSGALT00000036822:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.457 A=NA C2=0.367
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]