HsaINT0187486 @ hg19
Intron Retention
Gene
ENSG00000163795 | ZNF513
Description
zinc finger protein 513 [Source:HGNC Symbol;Acc:26498]
Coordinates
chr2:27601334-27603115:-
Coord C1 exon
chr2:27602960-27603115
Coord A exon
chr2:27601922-27602959
Coord C2 exon
chr2:27601334-27601921
Length
1038 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGT
5' ss Score
8.23
3' ss Seq
TCTTATGTCTATTTCACCAGGAG
3' ss Score
8.67
Exon sequences
Seq C1 exon
TGGATACTGAAGACTCCCTCGACGAAGGACCCGGGGCCCTGGTATTGGAGAGTGATTTGCTACTAGGCCAGGATCTGGAGTTTGAGGAGGAAGAGGAAGAGGAGGAAGGCGACGGCAACAGTGACCAGCTCATGGGCTTCGAGAGAGACTCGGAAG
Seq A exon
GTGGGTTTTCGGGTCTTGGTTAAGGATTAGCGGCCGCTGGAGACCCCAGCCCTTCAGGAGGCAGGTTAGGTGAACAGAACACCATTTCCTGCCACAACCGAGGGCTGGTTTAGTTTACATTTGAGCTAGATGACTTCATTTGTTTAATGGTCCAATCACTTCCATCACTTTGTTGAGGTGAAGTTCTGAGGCCTGGTCAAAGGTGATAGGAATAGGAGGGTGGGTGAATCACATGGAGCAACTGATTAAAAGTAAATGCCCTGTCTCTCTCCCTAGCCCATTCCTTATGTGTATTTACTTTTAAGAGAGGTTCAGGGAAGCAAACTCTCTGTAAATCATTCAACCCAGTATTTAGGTCTAATCTAACTCCCTTTCACCTGCAGCGTAAGCTCCTTTTGTATTGAGAGGTTTTAGTTTCTGTCTTTATCCTTCCATGTCCCTCTTCCCTGTGATCTTAGCATCACCCTACCCTAATTTGCTGCACTACCCATCCACTTATGCAAGATGTTTTTTGAAAGTCATTGAGGGGATCCATGTAAATATCTGTTCTTTAGGCAGGCAAGTGGTATTACATGCATTACTTTCATTGTCTCCACTTCCCTCCAAATTTTGCCTCAGAGATAGGTTTTATTTTATATCAGCTCCTTACTAAAAGGGGCCTTAGCAATAGAGCTTAGAAAAAGGTCTTGGGGGCTCTCTCCCTTTCGTATTTTTACTTTCTTGTCTCAAGAATTAATTTCATTATGGATTCATTTCAGTCTGTGATCCACTGTGAGCCCTTGATCCTTGACCATTGAGGGAAACTAGATACAGGTCAATTCTACCATCACTAGATTAGTCCAGTGTAAGAGGTAGACAATTCATGTTGAATTTTCTGGAATTACTGCAGGGGAGACCTTGATTCCTAGGAGGGAACTAAAGGGATCATCAAAGCTAAGGGTGGAGCCAAGCAAGTGGGGAGACCATAAGTGAAAAGGGGAGAGTTTGGAGCCTGATCCTACCCTATGCTGATGTCTCTTCTTATGTCTATTTCACCAG
Seq C2 exon
GAGACTCTCTGGGGGCCAGGCCTGGGCTTCCCTATGGGCTGAGCGACGATGAGTCTGGGGGCGGCCGGGCACTAAGTGCGGAGAGTGAAGTTGAGGAGCCAGCCAGGGGTCCAGGGGAGGCCAGGGGTGAGAGGCCAGGCCCAGCCTGCCAGCTGTGTGGGGGGCCGACAGGTGAGGGGCCGTGTTGTGGGGCAGGAGGGCCGGGTGGGGGGCCCCTGCTGCCCCCACGGCTACTGTACTCATGCCGCCTCTGCACCTTCGTGTCCCACTACTCGAGCCACCTGAAGCGGCACATGCAGACACACAGCGGAGAGAAGCCGTTCCGCTGTGGCCGCTGCCCCTACGCCTCAGCCCAGCTCGTCAACCTGACACGACATACCCGCACCCACACTGGCGAGAAGCCCTACCGCTGTCCCCACTGCCCCTTTGCCTGCAGCAGCCTGGGCAACCTGAGGCGGCATCAGCGTACCCACGCAGGGCCCCCCACTCCTCCCTGCCCGACCTGTGGCTTCCGCTGCTGTACTCCACGACCAGCCCGGCCTCCCAGTCCCACAGAGCAGGAGGGGGCGGTGCCCCGGCGACCTGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163795-ZNF513:NM_144631:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.490
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=13.2),PF134651=zf-H2C2_2=WD(100=13.2),PF134651=zf-H2C2_2=WD(100=12.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAGGAAGAGGAGGAAGGCG
R:
TTCAGGTGGCTCGAGTAGTGG
Band lengths:
352-1390
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)