DreINT0023143 @ danRer10
Intron Retention
Gene
ENSDARG00000101203 | ZNF513 (2 of 2)
Description
zinc finger protein 513 [Source:HGNC Symbol;Acc:HGNC:26498]
Coordinates
chr17:5787514-5791775:+
Coord C1 exon
chr17:5787514-5787642
Coord A exon
chr17:5787643-5791094
Coord C2 exon
chr17:5791095-5791775
Length
3452 bp
Sequences
Splice sites
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
3' ss Seq
CTCTTGTGATGTCCTGTCAGACT
3' ss Score
5.85
Exon sequences
Seq C1 exon
TGGGAGCTGAAGATGGAGTGGCTGCTGGTAATAAGGAAAGCCTGGTGCTGGAGAGCGACTTCCTCCTCGGACAGGAACTGGGCTTTGGAGAAAATGACTACAGAATTGTTGGCTTTGAAAGGGATTCGG
Seq A exon
GTCAGTGACGGAATATGAATTACTTTTAGACGACTTCAAGTTTTAAGCATTTTTTTTCTTTACTGTTCCAAACCTGTGCCAATGGTACAAGTCTAAGTGTAAAAGTAATGTTATTAAATTTTTTAATTAATTAATTAGCTTCAAAATTTCCTTCAAATATTACATTATGTAATATTTTATTATATTATATTATTGTGCAATATTATTATTCACTGGAGTATTATAAAATTAGTTGTAATAATAATTTTATTATTATTAATTATAAAAAAAATTTTTTACTGTCGTTGTCACAGATCCAAAATGCCAACCAGGCCCTCATCGATGTAATAATTCATCCAGCATTATTTGCTACTATTCCATACTAGGCATTAACTCTTATTGTAGTGTTTTTTTTTTTTTTTGGTAAATTATTGATTATTAAATAAATTATTGGTAATTTTATGTAAAGGTAAAAATATAATAATAAATAATATTCATGTTATATTATATAATTGTTTTATTTATTACATCATTTTGTTGTTGTTTTCACTGACCCAAAAAGCCACCCTTAAGGCCTTTATTCGGTAATATAATAATATTTCTTATTGTTATTATTATTTATATTTTTAAAATATCATTATAATAATTTATTTTTATTATATTATCAATAATAAGTTGTAGTAATTTAATATTATTATTATTATTACATGGTTTCTGCTACATTCATTCTTCCGTGGCGGGCGCTGCACCAAAATTCATCCGGCCACGGCTACATTACAGCTTCTTATTCAAAATATTCGATCGTTTTTTAAGTAGCGGGTTAAAATCGAAAACGTATTAAACGGTAAGTGAATTATAACAGCGCAAACTTTTCTGTGACCATCAAGTTCTATACAGTATGAATGTGAAAAGTATAAATGGAATTCGGATGTACTACATTCGCCATTTTGACATAGTCACGTGACGTACCTGCGTAATTTGCGTCACTTTACTCCCATTCATGAATTCGCTCGCGGGGCATTATGGGATAGCGCAGCATGCATGGGATGCGCACTCCAGAATCTCGCCGGAAGTAGTAAGTCATCCGGGTACTTCTCGCATACTGTTTTTCGAATTCTATGAATTTGGACATACTACTCGGCTCACATACTGATTTTAGCGTACTATATAGTATGGAAGTATGCGTTTTCGGACGCAACCACACCGGTTTTTGACCGTAACATAAAGTAACGAGAGCAGTGTAATATAGATGAAGGAATTTTGTTGATTGGAAAATAATGACGTTTTTATTGCATCTGTTTTACCTACAGACTCTGACTTTTAATGCGAAAAAAAAGCTTGCTTAACCTATCAACAATAGCAGCAATTGGAAAGCCGCTACAATTATTATTAATAATAATAATAATAAATATTTTTCTGCTGTAAAAATGCCAAATCCAAAATGCCAACCAGTGCCTTAACTATGTAATAATTGACTCTAAATAATTTTGCTAAACTATTCCATACAAAGCATTTGCTATTATTGTAGAAGTTTTGTTATTTATTGGTAAATTATTAATTATTAAATTCAATTAATTATTGGTATGATTAGGTTAAATTTTATTTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATAATTTATGAATAATATACATTATATTCTTTTATCTTATATTTATTCGAAAATTATATTGCTTTACCCAAATAGACACTCTTAAAGCCTTTCTTTATTAATATAATAATATTATTTATTATTGTTGATATTATTCATATACTTGTTGATATAATTATAATAATTTATTTTTTATATATAATAATAATAATACTATAACAATTGCTATTTTAATTAGGTGTAGTACAAATAATAATAATGCAAAAAGTCTGCAGATTTATGCGGAACGATTATCATACCTAAAAACTTAATATATGAAATAAAAAATATATACATTTTAAACTTTGAATGTTTACTATGCAAATCCAATTAGACCCACTTATTTGGTCAACACAGCAAATCTCTCATATAATATATCTACTAGAAGACAGAAAATATTACTTCACAAACTGTATTGTAAATAAATCATGAATGCTTTACTGTATTATTTATCTATTATTTATACTCTATTATATCACAATAATATTAGAGAAATCAATTTAAAAACTGAATAAATATAACATAATATAAAGTTACACACATTTACACAAGTAAATACTCAATGATGGCTAAAATTGAGCGTAAATCTGCGGATTTTTGCGCATACAGATTCCGTGTGTCTGCAATTTATTTATTATTTATTTATCATTGATTGATTGATTGATTGATTTATATTTATATATTTTATATTTTTAAGCAGTAAAAAATAAATACATTTTTTTTAACTAATAATAATAATTTAAAAAAAAAATAAAAGTGTTTGGTTATCTTTATGTTATCTTAGTTTTATTCATATAAATACCCTTTTTTCTTTCTTTTTTCTTTCAATGCTATGATTGTGGTAGAGGAGGGGTAATGTACTGCTTTAAATTGCAAATGAAAAAGCTCAATAAATAAATATTAAATGCGAAAAAACAAAACAAATACTGCATAACCAATCATCTCTTGTGATGTCCTGTCAG
Seq C2 exon
ACTCTGTGGCGGCTGATATGGGCATGCCGGTGTACGGTTTCAGTGATGAAGACTGCTCCAGCTACAACCGTCTCGGTATCGAGAGTGACTTCGAGGACCCTCGAGACACCGAGAGCGAGCGTGAAGAAATGGCTCCCGAAGCTGCGTTTGCACCATATCTGTCCTGCAGACAGTGCGGCCAGCTGCTGGGTGACCCTTTGAGTGGCCTCTACTGCCTTCAATGTGGAGAAACTGACCGGCAGGACCGATCCCTGGAACCCACTCATCCAGCAGACAACACACTAGAAAACCTAAACCACAGCAGATCTGATGGAAACACGTCTAAAACGTTCTCCTGCAAGCTGTGCAGTTTCAGCTCGCGCTACTCCAATCACTTGAAGCGGCACATGAAGACACACAACGGTGAGAAACCGTACCAGTGTCCGCACTGTGTGTACGCGTCGGCGCAGCTGGTGAATCTGCAGAGGCACGTGCGCACACACACCGGAGAGAAACCGTACAAATGCCAGTTCTGCACTTTCGCATGCAATTCTCTGGGAAACCTGAAGAGGCACCAGCGCATGCACACGCAGGAGAAAGAGCTCAGCTGCGCACACTGCGACTTCAGAGCCAGCAACAGCCACTCTCTAAAGAAACACACCAAGAGCCATAAGGAGGACAAAACTACTGCCTTAACGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101203:ENSDART00000168326:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.136 A=NA C2=0.307
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=11.4),PF134651=zf-H2C2_2=WD(100=11.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]