DreEX6000674 @ danRer10
Exon Skipping
Gene
ENSDARG00000045837 | SSC5D (2 of 2)
Description
scavenger receptor cysteine rich family, 5 domains [Source:HGNC Symbol;Acc:HGNC:26641]
Coordinates
chr4:5394545-5401841:+
Coord C1 exon
chr4:5394545-5394646
Coord A exon
chr4:5400103-5400441
Coord C2 exon
chr4:5401533-5401841
Length
339 bp
Sequences
Splice sites
3' ss Seq
CTCAATGTGTGTTTTTTCAGTTT
3' ss Score
8.69
5' ss Seq
AGCGTGAGT
5' ss Score
8.2
Exon sequences
Seq C1 exon
AGATAGGAACGAAAGTGCCAATACCTGTTAATGGAACGCTGATAACTCAGGCTGATGGAAAAGTCTTCCATGAGAGAAAAAAAACTGCACCCTGACAGCCTG
Seq A exon
TTTTAGGAATTTCCTGTTTGTTTGTCAGTCCTCAAGTGAGACTCGTTGACGGCAGCAGCTCTTGTTCAGGAAGAGTGCAGGTTCTCCATTCTGACGAATGGCAAATAGTATGTTATGATGGCTGGGACTTGCTTGACGGAAATGTTGTGTGTGGGCAATTGGGTTGTGGGGAAGTGCAAGAGGTGAAAGTAGCAGCATTTTTTGGCCCAAGCTTAGAACAGATATGGATGAATCGGGTAAACTGTGTTGGGAATGAATCATCATTGGCAGACTGTGCGATGGAGAGTTTGGGACCAACCGGATGCCTGAAGGATTTATATGCTGGAGTCATCTGTCAGC
Seq C2 exon
CCAGAACTAGACTGGTGAGCGGCATCAACTCTTGTTCTGGACGAGTGGAGGTTTTCCATAACGGCTTATGGGGAACAGTGTGTGATGATTACTGGGGTCTGACAAACGCTGCAGTGGTGTGTAGAGAGCTGGGATGTGGAGACGTGATTGAGGCAAAGAGTAATGCTTATTTTGCAGAAGGTTCAGGGCAAATATTGATGGATGATGTGAACTGCTCCAGAGATGATAATGCATTGAGTAAATGTGAATTTGCTGGATGGGGAGTGCACAACTGTGTTCATTCAGAGGACGCTGGAGTCGTCTGTCAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045837-'10-16,'10-15,13-16=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0053013=SRCR=WD(100=86.0)
C2:
PF0053013=SRCR=WD(100=94.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAATACCTGTTAATGGAACGC
R:
GCACTCCCCATCCAGCAAATT
Band lengths:
353-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]