DreEX6001393 @ danRer10
Exon Skipping
Gene
ENSDARG00000045752 | si:ch211-161n3.4
Description
si:ch211-161n3.4 [Source:ZFIN;Acc:ZDB-GENE-110913-46]
Coordinates
chr4:10953141-10954737:-
Coord C1 exon
chr4:10954423-10954737
Coord A exon
chr4:10953936-10954250
Coord C2 exon
chr4:10953141-10953458
Length
315 bp
Sequences
Splice sites
3' ss Seq
ACCAACATGTCTTTGCACAGGTT
3' ss Score
7.31
5' ss Seq
CTAGTGAGG
5' ss Score
2.99
Exon sequences
Seq C1 exon
ATCATAAACAGTCCAGACTTATTGACGGATCTCATCTGTGCTCTGGGAGGTTAGAGATCCTTCATGATCAGACGTGGATGTCAGTGTGTGATGCTGCATTTGACCAGCAGGATGCAGAGGTTGTGTGTAGAGAGCTGGACTGTGGGGCTCCTGCTCAGGTGCTGAGAGCTGCTGCTTTTGACAAAGGAGACACTCAGATGTGGACACAAGAGATTCACTGCAGAGGAGATGAGACTCGCATTTCATTCTGTTTAATGTCACAATCACACAAAAACAATTGCACAAATGCCAGTAGAGTAAGCCTGATATGTTCAG
Seq A exon
GTTACACGGATTTTCGACTGGTCAATGGTTCAGACTCTTGTTCTGGAAGAGTGGAGCTTCAGTATTTCAGTAAATGGGGCACAGTGTGTGATGCATGCTGGGATATGAGAGCTGCCAGTGTCCTCTGTAAACAGCTGAATTGTGGGATTGCTGTGTCTGTTGTGGGATCAGACTGGTTTGGAGAGGGAAGTGGTGAAATCTGGGCTGATGTGTTTGATTGTGACGGGAATGAAACAAAACTCTCCGAATGTTCAATCTCTTCATGGAGTCGAGCTGAACGTTCTCATAGACGAGATGTTGGAGTCATCTGCTCTA
Seq C2 exon
GCCGCGGGTCCATCAGGCTGGTGGGTTCTGGGGGAGACTGTGCAGGGAGGCTGGAGGTTTTTCACAGCGGCTCATGGGGGACAGTGTGTGACGACTCCTGGGATATTAAAGATGCCCATGTGGTGTGCAGACAGCTGCAGTGTGGAGTGGCCCTCAGTAACCAGCAGGTACCAGCCTGGTTTGGTCCTGGTTCTGGACCCATATGGCTGGATGAGGTGGAGTGTGAGGGGAATGAGACGTCCCTGTGGAGCTGCTCTTCTCCAGGCTGGGGAAAACATGACTGTCGACACAAGGAGGATGTAGGAGTCGTCTGCTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045752-'8-12,'8-9,9-12=AN
Average complexity
A_C1
Mappability confidence:
89%=100=40%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
PF0053013=SRCR=WD(100=92.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTCATCTGTGCTCTGGGAGG
R:
GCTGTGAAAAACCTCCAGCCT
Band lengths:
354-669
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]