MmuEX6006852 @ mm9
Exon Skipping
Gene
ENSMUSG00000008845 | Cd163
Description
CD163 antigen [Source:MGI Symbol;Acc:MGI:2135946]
Coordinates
chr6:124267320-124268767:+
Coord C1 exon
chr6:124267320-124267634
Coord A exon
chr6:124267729-124268043
Coord C2 exon
chr6:124268672-124268767
Length
315 bp
Sequences
Splice sites
3' ss Seq
AAATCCCGGTCTCCTTTTAGGAT
3' ss Score
9.91
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCCACAGGGAACCCAGACTGGTTGGAGGAGAAATCCCATGCTCTGGTCGTGTGGAAGTGAAACACGGAGACGTGTGGGGCTCCGTCTGTGATTTTGACTTGTCTCTGGAAGCTGCCAGTGTGGTGTGCAGGGAATTACAATGTGGAACAGTCGTCTCTATCCTAGGGGGAGCACATTTTGGAGAAGGAAGTGGACAGATCTGGGGTGAAGAATTCCAGTGTAGTGGGGATGAGTCCCATCTTTCACTATGCTCAGTGGCGCCCCCGCTAGACAGAACTTGTACCCACAGCAGGGATGTCAGCGTAGTCTGCTCAC
Seq A exon
GATACATAGATATTCGTCTGGCAGGCGGCGAGTCCTCCTGTGAGGGAAGAGTGGAGCTCAAGACACTCGGAGCCTGGGGTCCCCTCTGCAGTTCTCATTGGGACATGGAAGATGCTCATGTCTTATGTCAGCAGCTGAAGTGTGGGGTTGCCCAATCTATTCCAGAAGGAGCACATTTTGGGAAAGGAGCTGGTCAGGTCTGGAGTCACATGTTCCACTGCACTGGAACTGAGGAACATATAGGAGATTGCCTCATGACTGCTCTGGGTGCGCCGACGTGTTCCGAAGGACAGGTGGCCTCTGTCATCTGCTCAG
Seq C2 exon
GAAACCAATCCCAGACACTATTGCCATGTAGTTCATTGTCTCCAGTCCAAACAACAAGCTCTACAATTCCAAAGGAGAGTGAAGTTCCCTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000008845-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGAAGTGAAACACGGAGAC
R:
TGCAGGGAACTTCACTCTCCT
Band lengths:
358-673
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: