RnoEX6015011 @ rn6
Exon Skipping
Gene
ENSRNOG00000010253 | Cd163
Description
CD163 molecule [Source:RGD Symbol;Acc:1310382]
Coordinates
chr4:156763754-156765218:+
Coord C1 exon
chr4:156763754-156764068
Coord A exon
chr4:156764166-156764480
Coord C2 exon
chr4:156765123-156765218
Length
315 bp
Sequences
Splice sites
3' ss Seq
TAATCCCAGTCTCCTTTCAGGAT
3' ss Score
5.88
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCCACAGGAAACCCAGACTGGTTGGAGGAGAAATCCCATGTTCCGGTCGTGTGGAAGTGAAACACGGAGACACGTGGGGTTCCGTCTGTGATTTCGACTTGTCTCTGGAAGCTGCCGGCGTGGTGTGCAGGGAATTACAATGTGGAACAGTCGTCTCTATCCTAGGGGGAGCACATTTTGGAGAAGGAAGCGGACAGATCTGGGGTGAAGAATTCCAGTGTAGTGGAGATGAGTCCCATCTTTCTCTGTGCTCGGTGGCGCCCCCACTGGACAGAACTTGTAGCCACAGCAGGGATGTCAGCATAGTCTGCTCAC
Seq A exon
GATACATAGATATCCGTCTGGCAGATGGCAAGTCCTCCTGTGAGGGAAGAGTGGAGCTCAAGACACTCGGAGCCTGGGGTCCCCTCTGCAGCTCTCACTGGGACATAGAAGATGCTCATGTCTTATGTCAGCAGCTTAAGTGTGGAGTTGCCCTTTCTACTCCAGGAGGAGCACATTTTGGGAAAGGAGCCGGTCAGGTCTGGAGGCACAAGTTCCACTGCACTGGAACTGAGGAGCATATAGGGGATTGCCCTATGACTGCTCTGGGTACACCGATGTGTTCTGACGGACAGGTAGCCTCTGTAATTTGCTCAG
Seq C2 exon
GAAACCAATCGCATACACTGTTGCCATGTAGTTCATCATCTTCGGTCCAAACAACAAGTTCTACCATTGCAAAGGACAGTGACGTTCCCTGCATAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010253-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCGTGTGGAAGTGAAACA
R:
CGTCACTGTCCTTTGCAATGG
Band lengths:
356-671
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]