DreEX6001401 @ danRer10
Exon Skipping
Gene
ENSDARG00000045752 | si:ch211-161n3.4
Description
si:ch211-161n3.4 [Source:ZFIN;Acc:ZDB-GENE-110913-46]
Coordinates
chr4:10940225-10943654:-
Coord C1 exon
chr4:10943340-10943654
Coord A exon
chr4:10940495-10940831
Coord C2 exon
chr4:10940225-10940293
Length
337 bp
Sequences
Splice sites
3' ss Seq
ATATATTTTTCTAAATTTAGGTT
3' ss Score
8.41
5' ss Seq
AATGTATTA
5' ss Score
-4.47
Exon sequences
Seq C1 exon
GAAATGTGGGAGTAAGGTTGGTTGGAGGTACCGACCGCTGTTCTGGTCGAGTGGAGGTTCTTTACAGAGGTCAGTGGGGAACAGTGTGTGACATTGGCTGGGATATGCCAGATGCTACAGTGGTGTGTAGAGAACTGGACTGTGGAGAACCTGTAGATGCTCTGGGTAACGCTCATTTTGGACCAGGATCAGGACCAATCTGGATGAATCGCTTAACATGTTCTGGATCAGAACCAAAGCTGAGGAAATGTGGATCAGTGGAATGGGGTATATATCACTGTGATCATTCTAAAGATGCAGGAGTCATCTGCTCTG
Seq A exon
GTTACACTGACTTAAGACTGGTAAATGGTTCAGACTCTTGTTCTGGAAGAGTGGAGCTTCAGTATCTCAGTAAATGGGGCACAGTGTGTGATGCATGCTGGGATATGAGAGCTTCCAGTGTCCTCTGTAAACAGCTGAATTGTGGGATTGCTGTATCTGTTGTGGGATCAGACTGGTTTGGAGAGGGACGTGGTGAAATCTGGGCTGATGTGTTTGATTGTGACGGGAATGAAACAAAACTCTCCGAATGTTCAATCTCTTCATGGAGTCGAGCTGAACGCTCTCATAGACGAGATGTTGGAGTTATCTGCTCTAGTGAGGACATTTTATTAATAAT
Seq C2 exon
ACAGCTGGGCTGTGGTTCTGTGCTCAACTTCTCGGGCTCCTCTTCATCCAGTCCTGAACACAGTCATGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045752-'21-25,'21-24,23-25=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.083
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=86.7)
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGTTGGTTGGAGGTACCGA
R:
AGGACTGGATGAAGAGGAGCC
Band lengths:
357-694
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]