HsaEX6064966 @ hg38
Exon Skipping
Gene
ENSG00000177675 | CD163L1
Description
CD163 molecule like 1 [Source:HGNC Symbol;Acc:HGNC:30375]
Coordinates
chr12:7374831-7376014:-
Coord C1 exon
chr12:7375700-7376014
Coord A exon
chr12:7375281-7375595
Coord C2 exon
chr12:7374831-7374923
Length
315 bp
Sequences
Splice sites
3' ss Seq
ATGGCCTTGTCTCCTCCTAGGAT
3' ss Score
9.82
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
CCCACAGGCAGCCCAGGCTGGTTGGAGCTGATATGCCCTGCTCTGGACGTGTTGAAGTGAAACATGCAGACACATGGCGCTCTGTCTGTGATTCTGATTTCTCTCTTCATGCTGCCAATGTGCTGTGCAGAGAATTAAACTGTGGAGATGCCATATCTCTTTCTGTGGGAGATCACTTTGGAAAAGGGAATGGTCTAACTTGGGCCGAAAAGTTCCAGTGTGAAGGGAGTGAAACTCACCTTGCATTATGCCCCATTGTTCAACATCCGGAAGACACTTGTATCCACAGCAGAGAAGTTGGAGTTGTCTGTTCCC
Seq A exon
GATATACAGATGTCCGACTTGTGAATGGCAAATCCCAGTGTGACGGGCAAGTGGAGATCAACGTGCTTGGACACTGGGGCTCACTGTGTGACACCCACTGGGACCCAGAAGATGCCCGTGTTCTATGCAGACAGCTCAGCTGTGGGACTGCTCTCTCAACCACAGGAGGAAAATATATTGGAGAAAGAAGTGTTCGTGTGTGGGGACACAGGTTTCATTGCTTAGGGAATGAGTCACTTCTGGATAACTGTCAAATGACAGTTCTTGGAGCACCTCCCTGTATCCATGGAAATACTGTCTCTGTGATCTGCACAG
Seq C2 exon
GAAGCCTGACCCAGCCACTGTTTCCATGCCTCGCAAATGTATCTGACCCATATTTGTCTGCAGTTCCAGAGGGCAGTGCTTTGATCTGCTTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000177675-'27-32,'27-29,29-32=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
PF0053013=SRCR=WD(100=92.5)
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCTGGACGTGTTGAAGTG
R:
CCCTCTGGAACTGCAGACAAA
Band lengths:
350-665
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains