DreEX6001434 @ danRer10
Exon Skipping
Gene
ENSDARG00000096156 | si:dkey-21h14.11
Description
si:dkey-21h14.11 [Source:ZFIN;Acc:ZDB-GENE-110913-62]
Coordinates
chr4:11102577-11103809:-
Coord C1 exon
chr4:11103507-11103809
Coord A exon
chr4:11103057-11103128
Coord C2 exon
chr4:11102577-11102891
Length
72 bp
Sequences
Splice sites
3' ss Seq
TGTTTCATATTTTATTTCAGTTA
3' ss Score
8.7
5' ss Seq
CAAGTAATT
5' ss Score
3.86
Exon sequences
Seq C1 exon
AATTTAAAGAGATCCGGTTAACTGAGGGCTGTGAAGGGAATGTGGAGGTTTTCTACAATGGATCCTGGGGAAATGTGTGCTGGAATCAGATGGACAGAGACACAGTGAGTCTGATCTGTCAGGAGCTGAACTGTGGAAGATCTGGAGTTTTGTCTGATTCAACATCAAGACTGAAATCAGCTCGAAACTGGCTTGATAAAGTTAAATGTCGACTACATGACTCTACTTTATGGCATTGTCCATCTTCACTCTGGGGTCAAAACTACTGTGATGAAGATGAGGTGGCCAATGTTACTTGCTCAG
Seq A exon
TTAAGAAGAGTGATGAGTCCCCTCGGAGTCATCTGACATGTTCCGCATCTACTCACCAGAGACAGTGCTCAA
Seq C2 exon
CTCATGTTCCTCTCAGACTGCGTGGAGGGGATGGCCGGTGCTCTGGGAGGCTGGAGGTGTATCATAACGCTGTGTGGGGCTCAGTCTGTGATGATCTCTGGGACATCAGCGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGAGCAGCACTGAGGGCTGATGGGAATTCAGCCTTTGGTGCTGGTGAAGGTGTTGTGTGGCTGAACAGAGTCCAGTGCAGAGGGAATGAGCTTCACTTGTGGGACTGTCCTCTCTCCCTGAACAACCACACTGACTGCTCCCACAAAGAGCACGCTGGACTCACCTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000096156-'7-8,'7-7,8-8=AN
Average complexity
A_S
Mappability confidence:
75%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=93.1)
A:
NO
C2:
PF0053013=SRCR=WD(100=92.5),PF151021=TMEM154=PU(13.9=15.1)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTCCATCTTCACTCTGGGGT
R:
TCGCTGATGTCCCAGAGATCA
Band lengths:
179-251
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]