RnoEX6005458 @ rn6
Exon Skipping
Gene
ENSRNOG00000018978 | Scart1
Description
scavenger receptor family member expressed on T-cells 1 [Source:RGD Symbol;Acc:1307378]
Coordinates
chr1:212704218-212705158:+
Coord C1 exon
chr1:212704218-212704535
Coord A exon
chr1:212704702-212704770
Coord C2 exon
chr1:212704844-212705158
Length
69 bp
Sequences
Splice sites
3' ss Seq
CGGCTGTGTTTGTTTTATAGGAC
3' ss Score
10.83
5' ss Seq
TAGGTAGGC
5' ss Score
7.72
Exon sequences
Seq C1 exon
AATCTGTGGCTCTGAGGCTGCGAGGTGGCACCAGTGGCTGCGTTGGATGGCTGGACGTGCTCTACAATGGATCCTGGGGTGCTGTGTGCAGCAATGCACTCAGAGACATCTCCTTGAGCATCATGTGCAGACAGCTGGGATGTGGGGACCAGGGCTGGCTGGAGAACAGGCCGTCTCCTGGGCCTGGCTTGGGAATCTCCTGGGTGGATAAGATCAAGTGTCGAAAGCTACACAATGCCACTCTGTGGCAGTGCCCTTCTGCCCCATGGAACCCACACTCCTGTACCCAGGAGGAGGAGGTCTGGATTAACTGTGAAG
Seq A exon
GACTGCCACAGATAGGTTCACAGGAGCCCGCACAGACCCCTAACTGCTCTTCCCCACTTGGCTGCTTAG
Seq C2 exon
AGGACAGCGTATTGCGTGTGCTCGGAGGCGAGGATGGCTGTTCCGGGCGTGTGGAGCTCTGGCACGCAGGCTCGTGGGGCACAGTGTGTGATGACTCCTGGGACCTGCTGGATGCCCAGGTTGTGTGCCGGCAGCTGGGCTGTGGCCAGGCCTTAGCTGCTTTGGAAGGTGCCGCCTTTGGCCCTGGTATGGGGCCTGTGTGGTTGGATGAGGTGGAGTGCCTTGGCAGCGAGGTGACCTTGGAGGCCTGCCAGGCTGAGCTCTGGGGACACGGAGACTGCACGCACAAGGAGGATGCAGGTGTTCGTTGTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018978-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0053013=SRCR=WD(100=92.5)
A:
NO
C2:
PF0053013=SRCR=WD(100=92.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGCCCCATGGAACCCA
R:
CAGGTCCCAGGAGTCATCACA
Band lengths:
170-239
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]