DreEX6002488 @ danRer10
Exon Skipping
Gene
ENSDARG00000045481 | gsap
Description
gamma-secretase activating protein [Source:ZFIN;Acc:ZDB-GENE-041210-216]
Coordinates
chr4:20492506-20493758:-
Coord C1 exon
chr4:20493666-20493758
Coord A exon
chr4:20492684-20492904
Coord C2 exon
chr4:20492506-20492575
Length
221 bp
Sequences
Splice sites
3' ss Seq
ATTACCTTGCTACTTCACAGGGG
3' ss Score
6.92
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
ATTATTATATAGTGGTGTACATGCCTGATCAGTTCCTGCACTTAATCAACTGCAGACAACAGGACCTTCTCTGCTACAGTCTTTTCCTGTCAG
Seq A exon
GGGCGGATGGTCATATTGAAGCACTGTGTTCGGGCAGAGCGGTTGTGAGTGTGTCTGGCAACCGGCTGCTTGATGTCCAAGCTGGCAGGATATACAACATGGATCTCAACCCAGACTTCCTGCTTGAGCTTCTGAGTTCAGGCAGACCTGAAGCCCAGCAGCTGGCGGCTCTGCACTGCATGCTGGTTTACCTGCAGCCAAATCCTGTGCTAGAGCTCAAG
Seq C2 exon
ATTATAAACTGGATCAGTGAGAACGTCATGAGCTTTGATGCTTTTGATCAGATTCAGGAATTTATTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000045481-'9-11,'9-10,10-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATAGTGGTGTACATGCCTGATCA
R:
AAATTCCTGAATCTGATCAAAAGCA
Band lengths:
148-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]