RnoEX6012364 @ rn6
Exon Skipping
Gene
ENSRNOG00000028801 | Gsap
Description
gamma-secretase activating protein [Source:RGD Symbol;Acc:1563271]
Coordinates
chr4:10457207-10460334:-
Coord C1 exon
chr4:10460242-10460334
Coord A exon
chr4:10459919-10460133
Coord C2 exon
chr4:10457207-10457276
Length
215 bp
Sequences
Splice sites
3' ss Seq
CATTTTTTCCTGTTCAATAGGAA
3' ss Score
9.41
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
Exon sequences
Seq C1 exon
GCTACTTTGTGGCTGTTTATTCCCCCTGCCGTTTCCTTCATTTACTTAACATTCGGCATCCAGACTTGATCTGCCACAGTCTGTTTCTCACAG
Seq A exon
GAAACAACAAAACGGCCGCTGTGCTACCTCCGAGTCCTTTGCAGTCCCTGCCGGGGTCCCTCATTCTGGACTGCTCTTCTGGAAAGGTCTATAGAGCAACTCTTGACCAGTCATACTTGATGGGTTTCCTGTGGAACGCCCAGCTAGACTGTGAGAAAATGGCTGCGCTGCATTGTGCACTGTCCTGTGATTCAGACCCAGGTTTCCCAGAACAG
Seq C2 exon
ATCGTTCAGTGGGTTTCTGAGCGTGTCTCTGCCTGCCATTCATTTGACCTCATTCAAGAATTCCTAATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028801-'18-27,'18-25,19-27=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGCTGTTTATTCCCCCTG
R:
CAATTAGGAATTCTTGAATGAGGTCA
Band lengths:
156-371
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]