DreEX6007564 @ danRer10
Exon Skipping
Gene
ENSDARG00000104440 | si:dkey-173l11.5
Description
si:dkey-173l11.5 [Source:ZFIN;Acc:ZDB-GENE-110406-4]
Coordinates
chr7:52959395-52960148:+
Coord C1 exon
chr7:52959395-52959523
Coord A exon
chr7:52959620-52959805
Coord C2 exon
chr7:52959904-52960148
Length
186 bp
Sequences
Splice sites
3' ss Seq
ACAAAATTTCTTTGTTTCAGCAC
3' ss Score
8.02
5' ss Seq
AAGGTACTG
5' ss Score
8.56
Exon sequences
Seq C1 exon
CAATGGTCTAGATATACTTTGGTTATTACGGCTACTGACATGAACGGAGAGGGTGGGTCAACCACTGGCACAGCAGTAATTACTGTTATGGACAGCAATGATAATGCACCTCTGTTTGAGCAAACCTCT
Seq A exon
CACACTGTATCTGTCCCAGAGAATCAAGTAGGGGCTAAAGTGGCCAACCTTCCAGTTACTGATGGAGATGAACCTGAATCAACAGCTTGGTCAACCAAGTATCGAGTCATTGGTGGTGACAAGGGTGGGTTTTTCAATGTCAGCACTGGACCCAGTCATCTAGAGGGCGTCATCACCACTGTAAAG
Seq C2 exon
CCTCTGGACTATGAGAAGACCAAGCAGTACATTCTGTCTGTGATTGTTGAGAACGATGATAAATTTGTCGGTTCTTTGCCTACTTCAACTGCCACAGTCACTGTGAATGTAGAAGATGTGAATGAGCCGCCTGAGTTTATTCCAAAGGAGAAGTTTATTTCCAAACCTGAAGATTTACCTGTTGGTAGTAATTTAGTCATTTACACAGCCACTGATGTAGACACTGAAAAAAAGCAAAAGATAAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104440-'2-14,'2-9,11-14=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.512 A=0.500 C2=0.171
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PD(29.0=67.4)
A:
PF0002812=Cadherin=PU(61.0=98.4)
C2:
PF0002812=Cadherin=PD(37.0=45.1),PF0002812=Cadherin=PU(32.6=37.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAATGAATAAGTGCTGTAGGC
R:
GCTCATCATAATAGTAGATGTTGTCC
Band lengths:
195-381
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]