DreEX6007563 @ danRer10
Exon Skipping
Gene
ENSDARG00000104440 | si:dkey-173l11.5
Description
si:dkey-173l11.5 [Source:ZFIN;Acc:ZDB-GENE-110406-4]
Coordinates
chr7:52959620-52960566:+
Coord C1 exon
chr7:52959620-52959805
Coord A exon
chr7:52959904-52960148
Coord C2 exon
chr7:52960424-52960566
Length
245 bp
Sequences
Splice sites
3' ss Seq
GCATTTCTTTTTCCTTTTAGCCT
3' ss Score
8.69
5' ss Seq
AACGTGAGT
5' ss Score
9.54
Exon sequences
Seq C1 exon
CACACTGTATCTGTCCCAGAGAATCAAGTAGGGGCTAAAGTGGCCAACCTTCCAGTTACTGATGGAGATGAACCTGAATCAACAGCTTGGTCAACCAAGTATCGAGTCATTGGTGGTGACAAGGGTGGGTTTTTCAATGTCAGCACTGGACCCAGTCATCTAGAGGGCGTCATCACCACTGTAAAG
Seq A exon
CCTCTGGACTATGAGAAGACCAAGCAGTACATTCTGTCTGTGATTGTTGAGAACGATGATAAATTTGTCGGTTCTTTGCCTACTTCAACTGCCACAGTCACTGTGAATGTAGAAGATGTGAATGAGCCGCCTGAGTTTATTCCAAAGGAGAAGTTTATTTCCAAACCTGAAGATTTACCTGTTGGTAGTAATTTAGTCATTTACACAGCCACTGATGTAGACACTGAAAAAAAGCAAAAGATAAC
Seq C2 exon
TTATAGAATTGACTATGATCCTTCTGTCTGGCTCAGTATAACAGACTCTGGACAGATTCAAGTCAAGAAACCTATGGATCGAGAATCTTCCAATGTCAAAGATGGCAAATACAAAGCTCTGATTTTGGCTTTGGATGATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000104440-'2-14,'2-10,12-14=AN
Average complexity
A_C3
Mappability confidence:
100%=83=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.500 A=0.171 C2=0.184
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PU(61.0=98.4)
A:
PF0002812=Cadherin=PD(37.0=45.1),PF0002812=Cadherin=PU(32.6=37.8)
C2:
PF0002812=Cadherin=FE(50.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAACAATGAATAAGTGCTGTAGGC
R:
GCTCATCATAATAGTAGATGTTGTCC
Band lengths:
195-440
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]