GgaEX6009515 @ galGal4
Exon Skipping
Gene
ENSGALG00000000608 | CDH1
Description
cadherin-1 precursor [Source:RefSeq peptide;Acc:NP_001034347]
Coordinates
chr11:18323069-18323805:+
Coord C1 exon
chr11:18323069-18323254
Coord A exon
chr11:18323342-18323586
Coord C2 exon
chr11:18323663-18323805
Length
245 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTCCCCACCCTGCAGGGC
3' ss Score
10.77
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
TACGAAGGTGTGGTGGAAGAGAATAAGCCAGGTACAGAGGTGGCCAGGCTGACTGTGACGGACCAGGACGCACCAGGCTCCCCAGCCTGGCAAGCCGTTTACCACATCAAGAGTGGGAACCTGGATGGTGCCTTCAGCATTATTACTGACCCCAGCACCAACAACGGAATCCTGAAGACAGCCAAG
Seq A exon
GGCCTGGATTATGAGACCAAGAGCCGCTACGACCTGGTGGTGACGGTGGAGAACAAAGTGCCCCTGTCCGTGCCCATCACACTCTCCACCGCCAGCGTCCTGGTGACCGTCCTGGACGTGAATGAGCCCCCTGTCTTCGTGCCCCCTATCAAGAGGGTAGGGGTACCAGAGGACCTACCAGTGGGGCAGCAGGTTACATCCTACACGGCCCAAGACCCCGACAGGGACATGAGGCAGAAGATCAC
Seq C2 exon
GTACCGCATGGGCAGCGACCCAGCAGGCTGGCTGTACATTCACCCCGAGAATGGCATTGTCACGGCCACCCAGCCACTGGACCGCGAGTCGGTGCACGCCATCAACAGTACATACAAGGCCATCATCCTGGCTGTGGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000000608-'14-13,'14-12,15-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.371 A=0.256 C2=0.122
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PU(61.0=98.4)
A:
PF0002812=Cadherin=PD(37.0=45.1),PF0002812=Cadherin=PU(32.6=37.8)
C2:
PF0002812=Cadherin=FE(50.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGAAGGTGTGGTGGAAGAGA
R:
ATGTACTGTTGATGGCGTGCA
Band lengths:
298-543
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]