DreEX6007551 @ danRer10
Exon Skipping
Gene
ENSDARG00000102750 | cdh1
Description
cadherin 1, type 1, E-cadherin (epithelial) [Source:ZFIN;Acc:ZDB-GENE-010606-1]
Coordinates
chr7:52830752-52831922:-
Coord C1 exon
chr7:52831737-52831922
Coord A exon
chr7:52831389-52831633
Coord C2 exon
chr7:52830752-52830894
Length
245 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTTCCCTTTTAGCCT
3' ss Score
11.57
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TACACTGTATCTGTCCCAGAGAATCAAGTAGGGGTTGAAGTGGCCAAACTTCCAGTTACTGATGGAGATGAACCTGAATCAACAGCCTGGTCAACTAAGTATCAGATCATTGCTGGTGACAAGGGTGGGTTTTTCAATATCAGCACTGGACCCAGTCGTCTAGAGGGCATCATCACCACTGTGAAG
Seq A exon
CCTCTGGACTATGAGAAGACCAAGCAGTACATTCTGTCTGTGATTGTTGTGAATGATGATAAATTTGTTGGTCCTTTGCCTACTTCAACTGCCACAGTCACTGTGAATGTAAAAGATGTGAACGAACCACCTGAGTTTATTCCAAAGGAGAAGTTTATTTCCAGACCTGAAAATTTACCTGTTGGTAGTAATTTGATCCCTTTTACAGCCATTGATCCAGACACTGAAAAAAAGCAGAACATAAC
Seq C2 exon
TTATAGAATTGGAAATGATCCTTCTGACTGGCTCAATATAACAGGCTCTGGGCAGATTCAAGTCAAGAATGCTTTGGATCGAGAATCTTCCAATGTCAAAGATGGCAAATACAAAGCTCTCATTTTGGCTTTGGATAATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102750-'13-14,'13-13,14-14=AN
Average complexity
A_S
Mappability confidence:
100%=75=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.226 A=0.256 C2=0.122
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PU(61.0=98.4)
A:
PF0002812=Cadherin=PD(37.0=45.1),PF0002812=Cadherin=PU(32.6=37.8)
C2:
PF0002812=Cadherin=FE(50.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAGTAGGGGTTGAAGTGGCC
R:
TCCAAAGCCAAAATGAGAGCT
Band lengths:
297-542
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]