MmuEX6038203 @ mm9
Exon Skipping
Gene
ENSMUSG00000000303 | Cdh1
Description
cadherin 1 [Source:MGI Symbol;Acc:MGI:88354]
Coordinates
chr8:109183490-109185930:+
Coord C1 exon
chr8:109183490-109183672
Coord A exon
chr8:109184696-109184940
Coord C2 exon
chr8:109185785-109185930
Length
245 bp
Sequences
Splice sites
3' ss Seq
GTCTTTCTCCTGTTCTCTAGGGC
3' ss Score
10.96
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
TATCAGGGTCAAGTGCCTGAGAATGAGGTCAATGCCCGGATCGCCACACTCAAAGTGACCGATGATGATGCCCCCAACACTCCGGCGTGGAAAGCTGTGTACACCGTAGTCAACGATCCTGACCAGCAGTTCGTTGTTGTCACAGACCCCACGACCAATGATGGCATTTTGAAAACAGCCAAG
Seq A exon
GGCTTGGATTTTGAGGCCAAGCAGCAATACATCCTTCATGTGAGAGTGGAGAACGAGGAACCCTTTGAGGGGTCTCTTGTCCCTTCCACAGCCACTGTCACTGTGGACGTGGTAGACGTGAATGAAGCCCCCATCTTTATGCCTGCGGAGAGGAGAGTCGAAGTGCCCGAAGACTTTGGTGTGGGTCAGGAAATCACATCTTATACCGCTCGAGAGCCGGACACGTTCATGGATCAGAAGATCAC
Seq C2 exon
GTATCGGATTTGGAGGGACACTGCCAACTGGCTGGAGATTAACCCAGAGACTGGTGCCATTTTCACGCGCGCTGAGATGGACAGAGAAGACGCTGAGCATGTGAAGAACAGCACATATGTAGCTCTCATCATCGCCACAGATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000000303-'10-14,'10-13,11-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.443 A=0.159 C2=0.180
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PU(60.6=98.4)
A:
PF0002812=Cadherin=PD(37.4=45.1),PF0002812=Cadherin=PU(32.3=37.8)
C2:
PF0002812=Cadherin=FE(51.0=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAATGAGGTCAATGCCCGG
R:
TCTGTGGCGATGATGAGAGCT
Band lengths:
306-551
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: