HsaEX6044571 @ hg38
Exon Skipping
Gene
ENSG00000039068 | CDH1
Description
cadherin 1 [Source:HGNC Symbol;Acc:HGNC:1748]
Coordinates
chr16:68813313-68819425:+
Coord C1 exon
chr16:68813313-68813495
Coord A exon
chr16:68815515-68815759
Coord C2 exon
chr16:68819280-68819425
Length
245 bp
Sequences
Splice sites
3' ss Seq
TCATTGTTTCTGCTCTCTAGGGC
3' ss Score
10.24
5' ss Seq
AACGTAAGT
5' ss Score
10.74
Exon sequences
Seq C1 exon
TACAAGGGTCAGGTGCCTGAGAACGAGGCTAACGTCGTAATCACCACACTGAAAGTGACTGATGCTGATGCCCCCAATACCCCAGCGTGGGAGGCTGTATACACCATATTGAATGATGATGGTGGACAATTTGTCGTCACCACAAATCCAGTGAACAACGATGGCATTTTGAAAACAGCAAAG
Seq A exon
GGCTTGGATTTTGAGGCCAAGCAGCAGTACATTCTACACGTAGCAGTGACGAATGTGGTACCTTTTGAGGTCTCTCTCACCACCTCCACAGCCACCGTCACCGTGGATGTGCTGGATGTGAATGAAGCCCCCATCTTTGTGCCTCCTGAAAAGAGAGTGGAAGTGTCCGAGGACTTTGGCGTGGGCCAGGAAATCACATCCTACACTGCCCAGGAGCCAGACACATTTATGGAACAGAAAATAAC
Seq C2 exon
ATATCGGATTTGGAGAGACACTGCCAACTGGCTGGAGATTAATCCGGACACTGGTGCCATTTCCACTCGGGCTGAGCTGGACAGGGAGGATTTTGAGCACGTGAAGAACAGCACGTACACAGCCCTAATCATAGCTACAGACAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000039068-'30-28,'30-25,33-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.121 A=0.068 C2=0.165
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PU(60.6=98.4)
A:
PF0002812=Cadherin=PD(37.4=45.1),PF0002812=Cadherin=PU(32.6=37.8)
C2:
PF0002812=Cadherin=FE(51.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCTGAGAACGAGGCTAAC
R:
GGCTGTGTACGTGCTGTTCTT
Band lengths:
295-540
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains