RnoEX6060454 @ rn6
Exon Skipping
Gene
ENSRNOG00000020151 | Cdh1
Description
cadherin 1 [Source:RGD Symbol;Acc:69279]
Coordinates
chr19:38827756-38829928:+
Coord C1 exon
chr19:38827756-38827938
Coord A exon
chr19:38828817-38829061
Coord C2 exon
chr19:38829783-38829928
Length
245 bp
Sequences
Splice sites
3' ss Seq
GTTTTTCTCCTTTTCTCTAGGGC
3' ss Score
11.58
5' ss Seq
CACGTGAGT
5' ss Score
9.3
Exon sequences
Seq C1 exon
TACCAGGGTCAAGTGCTTGAGAATGAGGTCGGTGCCCGTATTGCCACACTCAAGGTGACTGATGATGATGCCCCCAACACTCCAGCGTGGAATGCTGTGTACACCGTAGTCAATGATCCTGATCATCAGTTCACTGTCATCACAGACCCCAAGACCAACGAGGGCATTCTGAAAACAGCCAAG
Seq A exon
GGCTTGGATTTTGAGGCCAAGCAGCAGTACATTCTGCACGTGACAGTGGAAAATGAGGAGCCCTTTGAGGGGTCTCTTGTCCCTTCCACAGCCACTGTCACCGTGGATGTGGTAGACGTGAATGAAGCCCCCATTTTTGTGCCTGCGGAGAAGAGAGTCGAGGTGCCTGAGGACTTTGGTGTGGGTCTGGAGATCGCATCTTACACTGCGCGAGAGCCAGACACATTCATGGAACAGAAGATCAC
Seq C2 exon
GTATCGGATTTGGAGGGACACTGCCAATTGGCTGGAGATTAACCCAGAGACTGGGGTCATTTCCACTCGGGCTGAGATGGACAGAGAAGATTCGGAGCATGTGAAGAACAGCACGTATACAGCTCTCATCATTGCCACAGATGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020151-'15-11,'15-10,17-11=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.246 A=0.073 C2=0.320
Domain overlap (PFAM):
C1:
PF0002812=Cadherin=PU(60.6=98.4)
A:
PF0002812=Cadherin=PD(37.4=45.1),PF0002812=Cadherin=PU(32.6=37.8)
C2:
PF0002812=Cadherin=FE(51.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTGAGAATGAGGTCGGTGCC
R:
TGTGGCAATGATGAGAGCTGT
Band lengths:
307-552
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]